Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0946
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to...    31   0.66 
At1g77640.1 68414.m09039 AP2 domain-containing transcription fac...    28   4.7  
At3g52870.1 68416.m05826 calmodulin-binding family protein conta...    27   8.2  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    27   8.2  
At2g22050.1 68415.m02619 kelch repeat-containing F-box family pr...    27   8.2  
At2g04040.1 68415.m00385 MATE efflux family protein contains Pfa...    27   8.2  

>At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 373

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 586 LTSQAFCKIFIIPITYFRRHFEKKMCVELKIKSTKYIYLIT 464
           L  QAF  IFI P  Y  R   K     L +KS   I+L++
Sbjct: 32  LYRQAFATIFIFPFLYLSRRKSKIAISSLDLKSFSLIFLVS 72


>At1g77640.1 68414.m09039 AP2 domain-containing transcription
           factor, putative Similar to DREB1A (GP:3660548)
           [Arabidopsis thaliana]
          Length = 244

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = +3

Query: 87  RLWPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRP 266
           R W S        N    IW  SY T  ++   Y A+      P+   NLN  +   + P
Sbjct: 49  RSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPK--ANLNFPNITTTSP 106

Query: 267 TALNAPKRKRVEPK 308
             +N  ++  + PK
Sbjct: 107 FLMNIDEKTLLSPK 120


>At3g52870.1 68416.m05826 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 456

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 198 SKRANVPQKARNLNLTSRKLSRPTAL 275
           S +ANVPQK+  L + S+K SR   L
Sbjct: 378 SPKANVPQKSMLLRINSKKQSRSLQL 403


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 166 SAPHSLRTLHPRKGPMYRRRQGT*ISHQGSSRDQLR*MHQSAKGWNRKDDWSPHQPR--S 339
           S P   R+  PR+G   R R     +   + R Q R +    + + ++  +S   P   S
Sbjct: 141 SPPRYSRSPPPRRGRRSRSRSRG-YNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGS 199

Query: 340 RVLGGAEGQIRPHQR 384
           RV  G+ G+++ H R
Sbjct: 200 RVRSGSPGRVKSHSR 214


>At2g22050.1 68415.m02619 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 349

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 160 RYELVQIDSVVFVCVLFRASEGHSRQGKQANNNGLHSEKLYCFCITRVVVY 8
           R   V +D  V+   + R      R+GK+     + S+ ++C C+   V+Y
Sbjct: 228 RLSAVSLDWKVYTVEVGRIGVYDPREGKRKETLTIPSDIVWCMCVVNDVLY 278


>At2g04040.1 68415.m00385 MATE efflux family protein contains Pfam
           profile: PF01554 uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 411 SSVSYFFVNSLVGSYLAFSSSQN 343
           ++VSY+ V + VG YLAFS   N
Sbjct: 407 NTVSYYLVGAPVGIYLAFSRELN 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,484
Number of Sequences: 28952
Number of extensions: 268669
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)