Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0945
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    31   0.25 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.8  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   1.8  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   4.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.5  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = -2

Query: 298 FVLCVVDGSQTWKLKIRLSPSFAPTTHVLRLKFVNIIQMLYVIFFQVLRCTRPPEFGRSI 119
           FV+  ++  ++  L+I  S SF   T +  ++  +++Q +    F V   TR  +  RSI
Sbjct: 400 FVVPKIESDESLPLEITSSHSFK--TFLKMIELSSLLQDILQDLFTVRALTRHSKNNRSI 457

Query: 118 SRIVDSFFFRYRQIR 74
           S  +  FF R   IR
Sbjct: 458 SYQIIGFFTRLNSIR 472


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 3    VFSNSLRSATPLHRRRWSIIEICNR----ICLYLKKKLSTILEIERPNS 137
            +FSN++     L + RW+I     R    I LY KK++  IL ++ P S
Sbjct: 1554 LFSNNINHEFDLQQERWNIENHMGRSVIAIPLYQKKEVFAILYLQGPPS 1602


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 505 IINIIKYHTLNSKKKKSMLYIETIFSSVKYKNNNCANFEY 386
           ++NI      NSKK+KS+    TI  S + K++  A F Y
Sbjct: 458 VVNIFFLKHQNSKKQKSLASSSTIDLSEQPKDDKDARFHY 497


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 608 SWKWSEALRCSYIIFSSEFLLITYWSLTIKIRLCYHK 498
           +W W+  + C        FLL  Y+ + ++IR  Y++
Sbjct: 151 NWTWAHVVICYVFNVLVLFLLARYYQIVMRIRQRYYR 187


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 554 FLLITYWSLTIKIRLCYHKYYKISHFKFKEKKIYAI 447
           F    +W   +   L Y  Y++++HF      IY +
Sbjct: 352 FTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYTV 387


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 223  THVLRLKFVNIIQMLYVIFFQVLRCTRPPEFGRSISRIVDSFFFRY 86
            T +L + F++I   + + +    R  RPP + R  +++    F+RY
Sbjct: 1724 TPILCIPFIDIPHSVLLFWLHPSRQIRPPIYTRKQNQLRRRTFYRY 1769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,327
Number of Sequences: 5004
Number of extensions: 62367
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)