Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0943
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 583  CDFLQRNNLLSIIRAHEAQDAGYRMYRK 666
            CD ++R  ++  IR+H   D    MY +
Sbjct: 1664 CDRIKRGTVIRSIRSHSTWDPRRHMYEE 1691


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 715 NYLDVYNNKAAVLKYENNVMNIRQ 786
           NY   YNN    L Y+N ++NI Q
Sbjct: 328 NYKYNYNNYNKKLYYKNYIINIEQ 351


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 688 SLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 786
           SL   +   NY + YNN    L Y+N ++NI Q
Sbjct: 84  SLSNNYKYSNYNN-YNNYNKKLYYKNYIINIEQ 115


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 727 HPNSLVLRR*LSDWESQLFGFYDTFGSQH 641
           HPN  +LR   +D++ +L     +F S H
Sbjct: 103 HPNGKILRELQTDYDRRLHDNSPSFLSDH 131


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 730 YNNKAAVLKYENNVMNIRQ 786
           YNN    L Y+N ++NI Q
Sbjct: 338 YNNYNKKLYYKNYIINIEQ 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,568
Number of Sequences: 438
Number of extensions: 5244
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)