BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0941 (635 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.3 SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 27 2.3 SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.0 SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.0 SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 26 5.2 SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 6.9 SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 6.9 SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 6.9 SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 6.9 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.1 >SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1441 Score = 27.1 bits (57), Expect = 2.3 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 187 QPVSITDDQFTFPWVNLSPFSLFAPL-WKLIPTF 285 +P +ITDD P N L +PL W +I ++ Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091 >SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schizosaccharomyces pombe|chr 1|||Manual Length = 93 Score = 27.1 bits (57), Expect = 2.3 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = -1 Query: 296 PMSTKVGISFHKGANR-LNGERFTHGN--VNWSSV 201 PM+TK+G ++KG G++ HG V WS V Sbjct: 14 PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48 >SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1131 Score = 26.6 bits (56), Expect = 3.0 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -1 Query: 635 TGSSFLYGAPVSTIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAAL 486 + SS P + TT S+ + +T + V TRY + S+ VTS+++ Sbjct: 442 SSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491 >SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 349 Score = 26.2 bits (55), Expect = 4.0 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 248 LNGERFTHGNVNWSSVMETGCAITSLSRAGKAVTVAK 138 LNG T+G + +S T ++T L + K++T +K Sbjct: 237 LNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSK 273 >SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 345 Score = 25.8 bits (54), Expect = 5.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 591 YNALCIFRFIHIFADRRRH 535 YN +C F IHIF + RH Sbjct: 45 YNKVCQFGRIHIFHGKNRH 63 >SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.4 bits (53), Expect = 6.9 Identities = 9/42 (21%), Positives = 21/42 (50%) Frame = +1 Query: 496 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 621 D+ +L ++ L ++AP + +T +V+ + PY+ Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152 >SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2|||Manual Length = 525 Score = 25.4 bits (53), Expect = 6.9 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 458 KNWLANTSWSSSLASCDPWTKIKS 387 + W+ N+S S L CD KI+S Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210 >SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.4 bits (53), Expect = 6.9 Identities = 9/42 (21%), Positives = 21/42 (50%) Frame = +1 Query: 496 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 621 D+ +L ++ L ++AP + +T +V+ + PY+ Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152 >SPBC2G2.08 |ade9||C-1- tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr ogenase/methylenetetrahydrofolatecyclohydrolase/formylte trahydrofolatesynthetase|Schizosaccharomyces pombe|chr 2|||Manual Length = 969 Score = 25.4 bits (53), Expect = 6.9 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -1 Query: 302 LGPMSTKVGISFHKGANRLNGERFTHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAM 123 L P S V + + A + NG+R G+V++ S + +IT + +TVA + + Sbjct: 254 LKPGSVVVDVGIN--AVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENI 311 Query: 122 KTAKR--RGENIFLDI 81 A + R ENI+ I Sbjct: 312 VNAAKIARTENIYRKI 327 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.0 bits (52), Expect = 9.1 Identities = 11/45 (24%), Positives = 21/45 (46%) Frame = +1 Query: 472 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVET 606 LP S++ + + + G ++ PI+ V T + +PI T Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,007,740 Number of Sequences: 5004 Number of extensions: 34593 Number of successful extensions: 117 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 117 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -