Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0941
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 31 0.78
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 2.4
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047) 29 3.2
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06) 29 3.2
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 5.5
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 5.5
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 28 7.3
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 28 7.3
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) 27 9.7
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 394 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 543
I + G ++ E +H S+F +Y+LP + V++ +T DG L + A
Sbjct: 64 IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 466 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 618
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
Length = 405
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -3
Query: 312 SVDSWPDVHKSGDQLPQRSKQTEWRKVHPWEREL--VICNGDGLRD 181
+V S+ + KSG +P R++ T +R +PW +E+ ++C D L +
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTNDVLTE 178
>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
Length = 371
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 305 ILGPMSTKVGISFHKGANRLNGERFTHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKA 126
I+GP+ K G F R G F NW V+ T T +S A + V +PA
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275
Query: 125 MK 120
K
Sbjct: 276 QK 277
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 406 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 495
G+ +E+D DV+A Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274
>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1091
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 67 EFETRISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAQPVSITDDQFTFPWVNLSPF 246
+F+ R+ F RLF V + FA VT + + + I+ P I +QF WV P
Sbjct: 685 DFDQRLLST-FVNRLFTVSSFESDFALVTDVDGKKGKNISMPEGIRREQFV-QWVEHLP- 741
Query: 247 SLFAPLWKLIP 279
P W +P
Sbjct: 742 DAQTPSWLGLP 752
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 184 AQPVSITDDQFTFPWVNLSPFSLFAPLWKLIPTFVDIGP 300
+ P + T DQ + + + SPFS APL P FVD P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253
>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 430 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 609
D DV+A Q YS PV + + + G L T + +KT+N + I+E
Sbjct: 61 DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120
Query: 610 APY 618
PY
Sbjct: 121 KPY 123
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 430 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 609
D DV+A Q YS PV + + G L T +KT+N + + I+E
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196
Query: 610 APY 618
PY
Sbjct: 197 KPY 199
>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
Length = 275
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 305 ILGPMSTKVGISFHKGANRLNGERFTH 225
+ G T+VGI H G NR+ + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,786
Number of Sequences: 59808
Number of extensions: 274773
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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