Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0940
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   5.2  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 513 ITLEIKHRPLYKSIYFIVFFFFWKMF 590
           I+L IK+RPL +  YF++F F    F
Sbjct: 505 ISLLIKYRPLLRFYYFVMFRFIMNKF 530


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 522 EIKHRPLYKSIYFIVFFFFWKMFSKYLTSSCVFAI*LLFYTFLSLCIK*SKNNW 683
           + ++ P +K I  ++F  FW ++        +FA+ +L   F   C+  +K NW
Sbjct: 86  QFRNDPCWKFIRTVLFVLFWLIWL------ALFAVAILLVCFSPTCVLRAKPNW 133


>U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK682.7 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 326 SPQ*SSLHDPITKHYLPSNVKKNIPYPRKCIVK 424
           +P  S  + PI+ HYLP       P+ RK + K
Sbjct: 18  TPPHSMYNSPISIHYLPKRASSADPFKRKALSK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,117
Number of Sequences: 27780
Number of extensions: 337516
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)