Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0940
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 574 KKNTIK*IDLYKGRCFISRVIYVIYYLHLG 485
           K + +K ID+Y G CF+     ++ Y  +G
Sbjct: 276 KISYVKSIDVYLGTCFVMVFASLLEYATVG 305


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 574 KKNTIK*IDLYKGRCFISRVIYVIYYLHLG 485
           K + +K ID+Y G CF+     ++ Y  +G
Sbjct: 276 KISYVKSIDVYLGTCFVMVFASLLEYATVG 305


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 574 KKNTIK*IDLYKGRCFISRVIYVIYYLHLG 485
           K + +K ID+Y G CF+     ++ Y  +G
Sbjct: 215 KISYVKSIDVYLGTCFVMVFASLLEYATVG 244


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 463 LRFYTILYPNVDNI 504
           LRFY ++Y  +DNI
Sbjct: 556 LRFYNVVYKLIDNI 569


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 747 IKKFDLLHQYKIIKWNKEIYITNYS 673
           IK  +LL +  I + N + Y+TNYS
Sbjct: 52  IKMQELLQEEDISEGNIKKYLTNYS 76


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 478 SYKSEVNIDFIYLFIKIKLNNT 413
           S+ +E  + F+Y F  IKL  T
Sbjct: 927 SFPTETGLPFVYTFNVIKLTKT 948


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 392 FFLHLRVNNVL*WDRGESSIVGTLLKVLYVYNYNIV 285
           +F+H  + NVL WD  E + +    K ++  N   V
Sbjct: 104 YFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAV 139


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 302 YNYNIVHSLIYIKYDF 255
           ++ N++H   YI YDF
Sbjct: 33  HSMNVIHEWKYIDYDF 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,855
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)