Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0939
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   2.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.3  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   4.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   7.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.6  

>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 159 WGILCGAGIAITRCTWIRISRGPPVCSSDDSH 64
           +G+L G   AIT   W R SR    CSS D+H
Sbjct: 86  YGVLNGCKGAITDLQWSRDSR-VVYCSSSDTH 116


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +2

Query: 17  PMAPVSRQASFPLPMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPADSSY--S 190
           P A VSR  S     P ++       P    +HV  V A P P      P P  ++   S
Sbjct: 146 PSASVSRANSTATTTPHKAGV--VSNPAAANVHVLSVAASPNPSTPSNGPAPVSTTATPS 203

Query: 191 RNGTT 205
           RN  T
Sbjct: 204 RNPVT 208


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 27  QLAARRPSRCRCHGNRLKSKREVPARCVSTCNALLQSRHRTICPKHPNPQTAPTQEMEQP 206
           Q AA   S+       L+ +RE   R      A + +    I PK   PQ   T++ E  
Sbjct: 50  QNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAI-PKKQTPQNFLTRKEEVK 108

Query: 207 EGQKV 221
           E QK+
Sbjct: 109 ESQKI 113


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 449 TSSAHAPSASGTTRH*REATLYAASLSSQRRFDAGGRETRE 571
           +SS HAPS  G  +H      Y  S  SQ+ F   GR TR+
Sbjct: 252 SSSGHAPSQQGGNKH-----SYKKS-DSQQSFHHKGRNTRK 286


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 524 LSSQRRFDAGGRETREALCLQMCLE 598
           +SS RRF   G   RE  C + C+E
Sbjct: 465 MSSHRRFPDWGDYQREVTCCRNCVE 489


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 315 GRLHAERSGVSHAGRPGSSPT-GDSSAPGHRPAPSG-PQVVP 196
           G LH  RS    +GRP  SP+    S P   P   G P+  P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 255 WGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQE 356
           W L    +H        AI+QS+ E +MD D+ E
Sbjct: 738 WSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 69   NRLKSKREVPARCVSTCNALLQSRHRTI 152
            N+++ K EVP RC+S+    + S  R I
Sbjct: 1037 NQVEEKIEVPQRCISSIIGRMGSTRRDI 1064


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 13  RTDGTS*PPGVLPAADAMGIV*RANGRSPRDAYPRATRYCNPGTAQYAPSTRTRRQLL 186
           RT  ++ P    P   A  +V       PR  +  A  Y N   A+Y P++ T  + L
Sbjct: 224 RTMESTSPTDSQPQPSAPNLVSSTENEKPRVDFNYAIAYMNKVKARYPPNSDTYMEFL 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,502
Number of Sequences: 5004
Number of extensions: 52958
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)