Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0939
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 35 0.046
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 35 0.046
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 32 0.43
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 32 0.43
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 32 0.43
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 32 0.43
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 32 0.43
AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical ... 31 1.00
U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical pr... 30 1.3
U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 30 1.3
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 30 1.3
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 1.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 1.7
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 2.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.0
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.0
Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical pr... 29 4.0
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 29 4.0
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.0
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.0
U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter... 29 4.0
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 29 4.0
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 5.3
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 5.3
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.3
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 27 9.3
U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical pr... 27 9.3
U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 9.3
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 9.3
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 27 9.3
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 9.3
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 35.1 bits (77), Expect = 0.046
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 152 MPQAPEPADSSYS-RNGTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 325
MP A D S+ GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 123 MPNAVCCDDRSHCCPTGTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 35.1 bits (77), Expect = 0.046
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 152 MPQAPEPADSSYS-RNGTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 325
MP A D S+ GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 123 MPNAVCCDDRSHCCPTGTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 295 ERCIACRSAGVKPHGRLICTGAPSCT 218
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 196
G S+ G PG P GDS PGH R P+GP P
Sbjct: 213 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 244
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 196
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 196
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 295 ERCIACRSAGVKPHGRLICTGAPSCT 218
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical
protein T24E12.10 protein.
Length = 632
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 456 QRTLLLPQEQHDIDERPHYMQPRSVRSVDSML 551
Q T P+ Q+DIDE H++ +SV V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579
>U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical
protein D2096.6 protein.
Length = 171
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 224 GRCPGADESPVGLDPGRPACDTPLRSAC 307
G+CPG P+ DP RP P +S C
Sbjct: 50 GQCPGGPSLPIECDPKRPWPQCPPQSYC 77
>U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical
protein T25E4.1 protein.
Length = 231
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 224 GRCPGADESPVGLDPGRPACDTPLRSAC 307
G+CPG P+ DP RP P +S C
Sbjct: 109 GQCPGGPSLPIECDPKRPWPQCPPQSYC 136
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 QSRHRTICPKHPNPQTAPTQ--EMEQPEGQKVQDGAPVQMSLPWGLTPADLHAIHRSAQH 305
Q H TI P+ P P+ + + E E+ E + Q APV + +T A RSA
Sbjct: 92 QHEHTTIDPRSPPPKRSILELLEQERLENELQQQSAPVPKTPVMVITKG---AFPRSASP 148
Query: 306 AIDQSRREQQMDNDMQE 356
Q RE + N++++
Sbjct: 149 RRQQFVRENEDGNELEK 165
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 QSRHRTICPKHPNPQTAPTQ--EMEQPEGQKVQDGAPVQMSLPWGLTPADLHAIHRSAQH 305
Q H TI P+ P P+ + + E E+ E + Q APV + +T A RSA
Sbjct: 92 QHEHTTIDPRSPPPKRSILELLEQERLENELQQQSAPVPKTPVMVITKG---AFPRSASP 148
Query: 306 AIDQSRREQQMDNDMQE 356
Q RE + N++++
Sbjct: 149 RRQQFVRENEDGNELEK 165
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.9 bits (64), Expect = 1.7
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPLPMPWESSEEQTGGPREM-RIHVQRVIAIPAPHN------MPQA 163
AP+ P+APV++ P+ S + P E+ R+ V + P P PQA
Sbjct: 1469 APVAPVAPVAQPVQPIQPVQPVQSVQSLPQPAEIPRVVVPQSPGTPQPVVPQVSIVTPQA 1528
Query: 164 PEPADSSYSRNGTT*GPEGAGRCPGADES---PVGLDPGRPA 280
P+P ++ S + PE P E+ P L P PA
Sbjct: 1529 PQPTAAATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPA 1570
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +2
Query: 128 IAIPAPHNMPQAPEPADSSYSRNGTT*GPEGAGRCPGADESPVGLD--PGRPACDTPLRS 301
+ P P AP PA S G GP G PG P G D PG+P
Sbjct: 220 VGAPGPAGPRGAPGPAGHPGSSGGGRPGPAGPKGAPGQPGRP-GPDGHPGQPGRPGQSGG 278
Query: 302 ACNRPVTP 325
+ NR V P
Sbjct: 279 SGNRGVCP 286
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 303 AERSGVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVPFLE*ELSAGSGAWGI 151
A G S GRPG P G APG RP P G P + S GSG G+
Sbjct: 235 AGHPGSSGGGRPG--PAGPKGAPGQPGRPGPDGHPGQPGRPGQ-SGGSGNRGV 284
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 276 GRPGSSPTGDSSAPGHRPAPSGPQVVP 196
GRPG + G SS PG P P+GP P
Sbjct: 242 GRPGKNAQGGSSRPG-PPGPAGPPGPP 267
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGHRPAPSGP 208
GV G PG P GD+ +PG AP P
Sbjct: 216 GVGAPGAPG--PAGDAGSPGQPGAPGQP 241
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = +2
Query: 137 PAPHNMPQAPEPADSSYSRNGTT*GPEGAGRCPGADESPVGL-DPGRPACD-TPLRSACN 310
P P P P P S GP G PG D P G PG P D P A
Sbjct: 251 PGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAY 310
Query: 311 RPVTP*TTNG 340
P P T G
Sbjct: 311 CPCPPRTPAG 320
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +2
Query: 137 PAPHNMPQAP-EPADSSYSRNGTT*GPEGAGRCPGADESPVGLD-PGRP 277
P P P P EP S S GP G G PG D P PG P
Sbjct: 206 PGPAGQPGQPGEPGHSDTSSTAGPPGPPGPGGPPGQDGHPGDAGAPGAP 254
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPL-PMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA-- 175
+P GP P P P + + GGP E Q P P P PA
Sbjct: 175 SPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGN 234
Query: 176 DSSYSRNGT----T*GPEGAGRCPGADESPVG 259
D + G GP GA PGAD +P G
Sbjct: 235 DGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPL-PMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA-- 175
+P GP P P P + + GGP E Q P P P PA
Sbjct: 175 SPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGN 234
Query: 176 DSSYSRNGT----T*GPEGAGRCPGADESPVG 259
D + G GP GA PGAD +P G
Sbjct: 235 DGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPL-PMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA-- 175
+P GP P P P + + GGP E Q P P P PA
Sbjct: 175 SPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGN 234
Query: 176 DSSYSRNGT----T*GPEGAGRCPGADESPVG 259
D + G GP GA PGAD +P G
Sbjct: 235 DGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPL-PMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA-- 175
+P GP P P P + + GGP E Q P P P PA
Sbjct: 175 SPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGN 234
Query: 176 DSSYSRNGT----T*GPEGAGRCPGADESPVG 259
D + G GP GA PGAD +P G
Sbjct: 235 DGAPGTGGPGPAGPKGPPGAAGAPGADGNPGG 266
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -3
Query: 279 AGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSG 163
AG PG+ T +APG P P+GP P E AGSG
Sbjct: 197 AGAPGTKTT---NAPG-EPGPAGPPGPPGPNGEAGAGSG 231
>Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical
protein R07H5.8 protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 114 TCNALLQSRHRTICPKHPNPQTAPTQEMEQPEGQKVQDGA 233
TC AL+ HR++C T +++ E QK+ + A
Sbjct: 121 TCAALINGTHRSLCAHLAAANTFTQDHLQKEENQKIIEQA 160
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 294 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 196
SG+ G PGSS P S P P PSG V P
Sbjct: 13 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 48
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 294 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 196
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 294 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 196
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 17 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 315 GRLHAERSGVSHAGRPGSSPTGDSSAPG-HRPAPSGPQ 205
GR+ + G G GS P+G S G H P GPQ
Sbjct: 60 GRVRRQAGGYGGYGGYGSGPSGPSGPSGPHGGFPGGPQ 97
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -3
Query: 339 PFVVHGVTGRLHAERSGV-SHAGRPGSSPTG----DSSAPGHRPAP 217
PFV+H T RL + R+G+ + +G P+G D P + P P
Sbjct: 1090 PFVMHDYTARLTSNRNGIGAWSGSESIVPSGWGDWDGPEPDNSPMP 1135
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = -3
Query: 276 GRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSGAWGILCGAGIAITRCTWIRISR 97
G PG++P+G ++ P P P GP P + + G G GA A+T +
Sbjct: 190 GAPGNTPSGGAAGP---PGPPGPPGGPGNDGQ-PGGPGN----PGAPGAVTEVPGQQGPP 241
Query: 96 GPPVCSSDDSHGIGSGKDAWRLTGAIGPSG 7
GPP + +G+ + G GP G
Sbjct: 242 GPPGPAGPPGPAGNAGQAGYAQPGPAGPPG 271
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSG 163
G S G GSS G SAP P P P P +S+G G
Sbjct: 280 GGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGG 322
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 291 GVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSG 163
G S G GSS G SAP P P P P +S+G G
Sbjct: 280 GGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGG 322
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 306 HAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVP 196
H ++G S G PG P GD+ APG AP G Q P
Sbjct: 294 HPGQAGSSLPGAPG--PQGDAGAPGQPGAP-GQQGEP 327
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 7.0
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +3
Query: 54 CRCHGNRLKSKREVPARCVSTCNALLQSRHRTICPKHPNPQT---APTQ---EMEQPEGQ 215
CR + S+ A C +TC+++ S+ P+ P T AP + +++Q + Q
Sbjct: 171 CRSSCSNRVSQSTCDATCQNTCSSMCPSQSPQGSPQLPTQTTTTNAPIKIKIQVQQQQPQ 230
Query: 216 KVQDGAPVQMSLPWGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQEVKT 365
+ +P Q + P P + ++ +I Q+ +QQ N M + +T
Sbjct: 231 QSPQNSPQQQAQPQASQP--IAQTTQTIPASIPQAAPQQQ-PNCMAQCQT 277
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 276 GRPG-SSPTGDSSAPGHRPAPSGP 208
G PG + P GD+ APG AP P
Sbjct: 172 GAPGPAGPEGDAGAPGDAGAPGAP 195
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 140 APHNMPQAPEPADSSYSRNGTT*GPEGAGRCPGADESPVGLDPGRPACDTP 292
AP + A +P + GP+G PGAD P G+ PG P D P
Sbjct: 182 APGDKGPAGQPGRNGPDGPNGEPGPKGPPGQPGADGQP-GM-PGEPGKDAP 230
>U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical
protein C05D11.7a protein.
Length = 621
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 575 LCLQMCLESALDYITSARDRTAGPPSPIYNL 667
+C+ + L ++ AR RT GP P +NL
Sbjct: 61 VCISHATSTILKVVSQARSRTFGPLHPEFNL 91
>U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical
protein C05D11.7b protein.
Length = 751
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 575 LCLQMCLESALDYITSARDRTAGPPSPIYNL 667
+C+ + L ++ AR RT GP P +NL
Sbjct: 61 VCISHATSTILKVVSQARSRTFGPLHPEFNL 91
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.3
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPLP---MPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA 175
AP GPM S + F P P++ + + R+ R Q P P A
Sbjct: 662 APGGPMRHNSYPSGFEPPPSVAPYDFPADPSKKQRKQRAKKQ-------PGEEPPAGRGK 714
Query: 176 DSSYSRNGTT*GPEGAG---RCPGADESPVGLDPGRP 277
R G AG GA E+P G+DP RP
Sbjct: 715 GGKKGRGAGAVGAAAAGGRKSAGGAGENPFGMDPMRP 751
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 279 AGRPGSSPTGDSSAPGHRPAPSGP 208
AG G++P+G P P P GP
Sbjct: 195 AGADGNTPSGGGEGPAGPPGPPGP 218
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPLPMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEP 172
+P P P SR S P P S+ + Q P PH P P P
Sbjct: 258 SPTKPPTPTSRPTSAPTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPHPKPPPPPP 313
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.3
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Frame = +2
Query: 5 APLGPMAPVSRQASFPLP---MPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPA 175
AP GPM S + F P P++ + + R+ R Q P P A
Sbjct: 662 APGGPMRHNSYPSGFEPPPSVAPYDFPADPSKKQRKQRAKKQ-------PGEEPPAGRGK 714
Query: 176 DSSYSRNGTT*GPEGAG---RCPGADESPVGLDPGRP 277
R G AG GA E+P G+DP RP
Sbjct: 715 GGKKGRGAGAVGAAAAGGRKSAGGAGENPFGMDPMRP 751
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 178 VCGFGCLGHIVRCRDCNNALHVD 110
VC FG +G +C C + +H D
Sbjct: 792 VCRFGIVGMTFQCNVCGHCMHTD 814
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,594
Number of Sequences: 27780
Number of extensions: 369064
Number of successful extensions: 1714
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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