BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0939 (677 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g07600.1 68418.m00871 oleosin / glycine-rich protein 31 0.93 At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 31 0.93 At5g21160.1 68418.m02528 La domain-containing protein / proline-... 30 1.2 At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 1.2 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.6 At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 29 2.1 At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 29 2.1 At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 29 2.1 At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 29 2.1 At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi... 29 2.1 At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf... 29 2.1 At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containi... 29 2.8 At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containi... 29 2.8 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 4.9 At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 28 4.9 At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 28 4.9 At4g10190.1 68417.m01670 F-box family protein-related contains T... 28 6.5 At2g20300.1 68415.m02371 protein kinase family protein contains ... 28 6.5 At5g51840.1 68418.m06427 expressed protein 27 8.6 At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 8.6 At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 27 8.6 At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 27 8.6 At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ... 27 8.6 >At5g07600.1 68418.m00871 oleosin / glycine-rich protein Length = 230 Score = 30.7 bits (66), Expect = 0.93 Identities = 27/92 (29%), Positives = 35/92 (38%) Frame = -3 Query: 276 GRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSGAWGILCGAGIAITRCTWIRISR 97 GR + GD S G S P+ +AG+GA GAG A Sbjct: 146 GRSFTGKFGDQSGGGSTAGGSTPE---------AAGAGAGAAAAGAGAAAAAGAAAAAVP 196 Query: 96 GPPVCSSDDSHGIGSGKDAWRLTGAIGPSGAK 1 G S+ G G+G A TG G +G+K Sbjct: 197 GLGAASAGAGPGAGAGTPAPAPTGKAGKAGSK 228 >At5g05190.1 68418.m00553 expressed protein similar to unknown protein (emb|CAB88044.1) Length = 615 Score = 30.7 bits (66), Expect = 0.93 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = +3 Query: 75 LKSKREVPARCVSTCNALLQSRHRTICPKHPNPQTAPTQEMEQPEGQKVQDGAPVQMS 248 L+ +VP C+A+LQ++ R I P P T+ + E Q V + V S Sbjct: 21 LQEDEDVPVYQCGGCSAILQAKRRNIAPS-STPSAGETERAQANEPQSVPETNNVSSS 77 >At5g21160.1 68418.m02528 La domain-containing protein / proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965, PF05383: La domain Length = 826 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -3 Query: 339 PFVVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFL 190 P VTG+ ++ G ++ G +P+G S PG R +GP P+L Sbjct: 80 PIPTPAVTGQAKSKGGGKANPGH--KNPSGRHSKPGPRSNQNGPPPPPYL 127 >At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 481 Score = 30.3 bits (65), Expect = 1.2 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = -3 Query: 306 HAERSGVSH-AGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAGSGA 160 H + S + H A P + P PG RPAPS V AGSGA Sbjct: 413 HHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAVSAISPDSAPAGSGA 462 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 29.9 bits (64), Expect = 1.6 Identities = 21/97 (21%), Positives = 39/97 (40%) Frame = +3 Query: 24 HQLAARRPSRCRCHGNRLKSKREVPARCVSTCNALLQSRHRTICPKHPNPQTAPTQEMEQ 203 H L+ PS CR H +PA+ + + + + + +AP E+ + Sbjct: 32 HSLSLSTPSLCRLH-RHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAP--EVVE 88 Query: 204 PEGQKVQDGAPVQMSLPWGLTPADLHAIHRSAQHAID 314 E K + + ++PW TP D+ ++ ID Sbjct: 89 EEISKTR---LIAQNVPWTSTPEDIRSLFEKYGSVID 122 >At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) Length = 130 Score = 29.5 bits (63), Expect = 2.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 137 PAPHNMPQAPEPADSSYSRNGTT*GPEGAGRCPGADESPVGLDPGRP 277 PAP + P + P+ SS + + PEG G PG + +P D P Sbjct: 58 PAPTSSPPSSAPSPSSDAPTASPPAPEGPGVSPG-ELAPTPSDASAP 103 >At3g10300.3 68416.m01236 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 335 Score = 29.5 bits (63), Expect = 2.1 Identities = 23/87 (26%), Positives = 32/87 (36%) Frame = +2 Query: 17 PMAPVSRQASFPLPMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPADSSYSRN 196 P P AS P +P+ + G P ++P HN P +P +SY Sbjct: 41 PPPPYGSSASSPYAVPYGAQPAPYGAPPSAPY-----ASLPGDHNKPHKEKPHGASYG-- 93 Query: 197 GTT*GPEGAGRCPGADESPVGLDPGRP 277 + P G G P + S G G P Sbjct: 94 --SPSPGGYGAHPSSGPSDYGGYGGAP 118 >At3g10300.2 68416.m01235 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 324 Score = 29.5 bits (63), Expect = 2.1 Identities = 23/87 (26%), Positives = 32/87 (36%) Frame = +2 Query: 17 PMAPVSRQASFPLPMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPADSSYSRN 196 P P AS P +P+ + G P ++P HN P +P +SY Sbjct: 41 PPPPYGSSASSPYAVPYGAQPAPYGAPPSAPY-----ASLPGDHNKPHKEKPHGASYG-- 93 Query: 197 GTT*GPEGAGRCPGADESPVGLDPGRP 277 + P G G P + S G G P Sbjct: 94 --SPSPGGYGAHPSSGPSDYGGYGGAP 118 >At3g10300.1 68416.m01234 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 232 Score = 29.5 bits (63), Expect = 2.1 Identities = 23/87 (26%), Positives = 32/87 (36%) Frame = +2 Query: 17 PMAPVSRQASFPLPMPWESSEEQTGGPREMRIHVQRVIAIPAPHNMPQAPEPADSSYSRN 196 P P AS P +P+ + G P ++P HN P +P +SY Sbjct: 41 PPPPYGSSASSPYAVPYGAQPAPYGAPPSAPY-----ASLPGDHNKPHKEKPHGASYG-- 93 Query: 197 GTT*GPEGAGRCPGADESPVGLDPGRP 277 + P G G P + S G G P Sbjct: 94 --SPSPGGYGAHPSSGPSDYGGYGGAP 118 >At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing protein low similarity to Chain A, Human Mrf-2 Domain [Homo sapiens] GI:14278238; contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 398 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 204 PEGQKVQDGAPVQMSLPWGLTP 269 P G+ V G P Q+ PWG+TP Sbjct: 343 PAGKVVITGQPEQLDNPWGITP 364 >At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 Length = 311 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -3 Query: 276 GRPGSSPTGDSSAPGHRPAPSGP 208 GRP S P SSAPG RP P Sbjct: 71 GRPDSDPNTSSSAPGKRPRGRPP 93 >At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 434 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 204 PEGQKVQDGAPVQMSLPWGLTP 269 P G+ V G P Q+ PWG+TP Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400 >At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 434 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 204 PEGQKVQDGAPVQMSLPWGLTP 269 P G+ V G P Q+ PWG+TP Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 28.3 bits (60), Expect = 4.9 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = +3 Query: 141 HRTICPKHPNPQTAPTQEMEQPEGQKVQDGAPVQMSLP 254 H PK P+P ++P Q P Q +PV P Sbjct: 271 HSPATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSP 308 >At3g27473.1 68416.m03434 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 662 Score = 28.3 bits (60), Expect = 4.9 Identities = 20/64 (31%), Positives = 26/64 (40%) Frame = -2 Query: 250 RLICTGAPSCTFWPSGCSIS*VGAVCGFGCLGHIVRCRDCNNALHVDTHLAGTSRLLFRR 71 +L+ TGAP T S C + CG + C DC L +D + G L Sbjct: 68 KLLTTGAPVHT--DSKCHL------CGKNTKHLLYHCYDCKVNLDIDCMIDGICTLARLS 119 Query: 70 FPWH 59 PWH Sbjct: 120 KPWH 123 >At1g65180.1 68414.m07390 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 653 Score = 28.3 bits (60), Expect = 4.9 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 175 CGFGCLGHIVRCRDCNNALHVDTHLAG 95 CG G G+ +C +C+ A HVD G Sbjct: 142 CGKGGSGYPYKCHECDLAFHVDCEKYG 168 >At4g10190.1 68417.m01670 F-box family protein-related contains TIGRFAM TIGR01640: F-box protein interaction domain Length = 353 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 261 LTPADLHAIHRSAQHAIDQSRREQQMDNDMQEV 359 L DLH IH + + I Q R + + N ++EV Sbjct: 55 LVSVDLHTIHNNKVNIISQLRLKDPLSNFLEEV 87 >At2g20300.1 68415.m02371 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 744 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = -3 Query: 300 ERSGVSHAGRPGSSPTGD--SSAPGHRPAP 217 E + +S+ G P SSP GD APG P P Sbjct: 212 EVTHISYPGIPSSSPNGDVTGDAPGGLPIP 241 >At5g51840.1 68418.m06427 expressed protein Length = 245 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 111 STCNALLQSRHRTICPKHPNPQTAPTQEMEQPEGQKVQDGAP 236 +T A L+ R + +PN + Q++++PE + V D AP Sbjct: 132 NTQYARLEELKRRLEALNPNRSSTSIQQVQEPETKSVVDSAP 173 >At4g27520.1 68417.m03952 plastocyanin-like domain-containing protein similar to PIR|JC7196 phytocyanin-related protein Pn14 {Ipomoea nil}; contains Pfam profile PF02298: Plastocyanin-like domain Length = 349 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Frame = -3 Query: 282 HAGRPGSSPTGDSSAPG--HRPAPSGP 208 HA PGSS G + PG H P S P Sbjct: 141 HAAAPGSSTPGSMTPPGGAHSPKSSSP 167 >At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic reticulum-type (ECA2) nearly identical to SP|O23087 Calcium-transporting ATPase 2, endoplasmic reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana}; contains InterPro Accession IPR006069: Cation transporting ATPase Length = 1054 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = -2 Query: 331 CSRRDWSIAC*AERCIACRSAGVKPHGRLI-CTGAPS 224 C+ D ++ AE C C AGV G+L TG P+ Sbjct: 415 CNNMDANLQAVAEICSICNDAGVFYEGKLFRATGLPT 451 >At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger profile; contains Pfam PF00569: Zinc finger, ZZ type domain; identical to histone acetyltransferase HAC4 (GI:14794966) {Arabidopsis thaliana} Length = 1456 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 586 NVPRVCSRLYNIGSRSHSGPSVSNL 660 N+P+V +L N GSR H G NL Sbjct: 353 NLPQVSQQLSNHGSRQHRGQHSQNL 377 >At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) identical to papain-like cysteine peptidase XBCP3 GI:14600257 from [Arabidopsis thaliana]; contains Pfam profiles PF00112: Papain family cysteine protease and PF00396: Granulin Length = 437 Score = 27.5 bits (58), Expect = 8.6 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Frame = -2 Query: 364 VFTSCMSLSICCSRRDWSIAC*AERCIACRSAGVKPHGRLICT-GAPSCTFWPSGC 200 +FT C S CC R+ C + +C SA GR C P C S C Sbjct: 352 LFTYCSSGETCCCARELFGLCFSWKCCEIESAVCCKDGRHCCPHDYPVCDTTRSLC 407 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,739,054 Number of Sequences: 28952 Number of extensions: 328123 Number of successful extensions: 1243 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1240 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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