Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0938
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   2.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   4.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   4.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.4  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/83 (19%), Positives = 35/83 (42%)
 Frame = +1

Query: 247 PKSNTSRMGVLVENEKKRTTIRRGNSKNVAIAQIKKENAAKIEMKRLAEGGSLPAVPERG 426
           P +N + +   +E++        GN+  V +  +      K   K        PA+P+  
Sbjct: 372 PSANVNEVIASLESKVVTRRTGSGNNYRVGLRNVSGSERTKSLSKESPVEPEKPALPDAT 431

Query: 427 PQSYPTYDEYSTGDSEGVHSNKK 495
             S PT +   +  ++G+ S+++
Sbjct: 432 SSSTPTTENKESWTNQGIKSSQQ 454


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 181 RYFKISVTYVIFTNIVSSNLFWSK*INEISKNNAPYLSIF 62
           RY  +    ++  +IV  N+ +S+ INE+ +++A  L+ F
Sbjct: 819 RYLSLIKCAIVIQSIVRKNIAYSRYINELRESSATLLAKF 858


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 366 SSILLLYLGYSNIFAISSSDGGSFLLILNQDSHSAGIGFW 247
           SSI+LL L Y   F  +    GS LL++      A I FW
Sbjct: 843 SSIVLLGLHYLKYFGSNKYILGSILLVMMSQVSLASIHFW 882


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 71  QVWRIVFRNFINSLRPKQVTGNNV-GKDYIGNTY 169
           ++W ++F +FI  +   Q TGN V   D++  T+
Sbjct: 2   RIWILIFFSFIKLVSSLQYTGNGVLALDFVAKTF 35


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 393 LCKPLHFNFSSILLLYLGYSNIFAISSSDGGSFLLILNQDSHSAG 259
           LC  L+ +FS+I  + LG  +        GG+++ ILN  S+  G
Sbjct: 380 LCYTLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSNLGG 424


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 224 HTNVMAFFYLHLD*QVFQNKCYL 156
           H N+++ +YLHL  ++F+   Y+
Sbjct: 891 HQNLLSCYYLHLSKKLFEESAYI 913


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 473  KVSTQTKNEIVVIKYYGKTYSNCTSNTICND 565
            K +T  + E+++  +Y   +++C S  +CND
Sbjct: 1044 KFTTNLQKEVIISPHY---FAHCLSEVVCND 1071


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,384
Number of Sequences: 5004
Number of extensions: 64337
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)