Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0938
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    40   0.002
At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family p...    31   1.3  
At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containi...    30   2.2  
At5g14910.1 68418.m01749 heavy-metal-associated domain-containin...    29   3.0  
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    29   5.2  
At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    29   5.2  
At5g05790.1 68418.m00637 myb family transcription factor contain...    28   6.8  
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot...    28   6.8  
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i...    28   9.0  

>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +2

Query: 140 VGKDYIGNTYFEIPASPSEGKRKPSRWYDPPKGQDFQNPIPAEWESWLRMRRKEPPSEEE 319
           +G D  GN YF       +G  K  RW    + +D    IP EW  WL  +RK  P+ EE
Sbjct: 18  IGVDKTGNKYFS-RMEEIDGFVKEKRWVKFRREED-PTSIPVEWICWLNGQRKRAPTPEE 75

Query: 320 I 322
           +
Sbjct: 76  M 76


>At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family
           protein contains Pfam PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit; similar to
           ethylene-regulated ER6 protein (GI:5669654)
           [Lycopersicon esculentum]; identical to Probable
           NADH-ubiquinone oxidoreductase subunit B17.2 (EC
           1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2)
           (Swiss-Prot:Q9M9M9) [Arabidopsis thaliana]
          Length = 159

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 140 VGKDYIGNTYFEIPASPSEGKRKPSRWYD-PPKGQDFQNPIPAEWESWL 283
           VG D  GN Y++       G+    RW +   K +   + +PAEW  WL
Sbjct: 52  VGVDKFGNKYYQKLGDTQYGRH---RWVEYASKDRYNASQVPAEWHGWL 97


>At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 624

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 51  CLMENIDKYGALFLEISLIHLDQNRLLETMLV 146
           C+ +N+D+   LF E+ L  LDQN +  T+++
Sbjct: 550 CIADNVDEAMRLFSEMGLKGLDQNSVTYTVMI 581


>At5g14910.1 68418.m01749 heavy-metal-associated domain-containing
           protein  Pfam profile PF00403: Heavy-metal-associated
           domain
          Length = 178

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 235 RSGFPKSNTSRMGVLVENEKKRTTIRRGNSKNVAIAQIKKENAAKI-EMKRLAEGGSLPA 411
           R+  P  +++ +  L +N   RT    GNS+N + A   K+N   + ++  + EGG   A
Sbjct: 15  RTKSPNLSSTHLLPLSKNLNFRTRAI-GNSRNCSFAGFIKQNRLGLRKLSSIGEGGEGVA 73

Query: 412 VPERGPQ 432
           V E  PQ
Sbjct: 74  VAEEQPQ 80


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 307 IRRGNSKNVAIAQIKKENAAKIEMKRLAEGGSLPAVPERGPQ 432
           I + N KN  + +  KE+     ++++AEGG  P+V + G Q
Sbjct: 622 ISQENMKNNLLQEFLKESLHSWLLQKIAEGGKGPSVLDEGGQ 663


>At2g21530.1 68415.m02562 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 209

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 319 NSKNVAIAQIKKENAAKIEMKRLAEGGSLPAVP 417
           N KN+ +  +   N   IE KRL  G + PA P
Sbjct: 145 NEKNLLVTDMNSTNGTFIEDKRLIPGVAAPAFP 177


>At5g05790.1 68418.m00637 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 277

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 77  WRIVFRNFINSLRPKQVTGNNVGKDYIGNTYFEIPASPSEGKRKPS 214
           WR + RNF+ S  P QV  +          Y++   S ++ KR+PS
Sbjct: 153 WRNISRNFVGSKTPTQVASH-------AQKYYQRQLSGAKDKRRPS 191


>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
           similar to cysteine-tRNA ligase [Escherichia coli]
           GI:41203; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 563

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +2

Query: 119 KQVTGNNVGKDYIGNTYFEIPASPSEGKRKPSRWYDPPKGQ----DFQNPIPAEWESWLR 286
           KQ+  N       G+ YF +   P+ GK    +  D   G+    D +   PA++  W  
Sbjct: 189 KQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVDTRKKHPADFALWKA 248

Query: 287 MRRKEP 304
            +  EP
Sbjct: 249 AKEGEP 254


>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
            identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
            thaliana] GI:22212705; contains Pfam profile PF03031: NLI
            interacting factor
          Length = 1241

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 441  WVRLRPSLWNCRERSALCKPLH 376
            W +LRP +WN  E+++    LH
Sbjct: 979  WTKLRPGIWNFLEKASKLYELH 1000


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,190
Number of Sequences: 28952
Number of extensions: 324525
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)