Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0936
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 29 0.33
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 2.3
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 3.1
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 4.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 5.4
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 5.4
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 5.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.2
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.5
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 9.5
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 453 IQNTNTPYYNYKPQTVLENDSCKLYYDRAILTDRTIHYNRPDITLQDKNNKV 298
+ N N Y + P+ E+D+ + D AI ++ +I+Y I + K K+
Sbjct: 78 LMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNTSIYYYEIQILSRGKEGKM 129
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 258 IQKTFTEKMTKYTELKEEIVRIWKQKKAY 172
I+K F + +LKEE+ + WK+++ Y
Sbjct: 142 IEKPFGKNYQSAVKLKEEVHKHWKEEEIY 170
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 540 FTLTQTDYTHRHNQLANIIHQQLALKHKLIQNTNTPY 430
FT+ +TDY H + L+ + H ++ +PY
Sbjct: 229 FTVVRTDYEHYRDPLSQTLITSCTRIHNIVAVIESPY 265
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 413 KPFLKMTPVNFIMIALFLPI 354
KPF+ + P+NF + LF PI
Sbjct: 129 KPFVDIYPINFTLHVLFDPI 148
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 357 DRTIHYNRPDITLQDKNNKVTYIIDIAVP--NTHNIQKTFT 241
+ ++H N ++ L D NN + I VP N N++ T T
Sbjct: 572 EASVHLNTKNLELADLNNNLVKQIQHRVPPENQSNLEHTIT 612
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2
Query: 162 IIISTTGV-VPNHIH-NSLKLLDLKDNIFISLQKAAI 58
I +S + + N +H NS++++DLK+NI LQK AI
Sbjct: 150 IYVSNNSIRMENTLHDNSVQIIDLKNNI---LQKKAI 183
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 369 RDHNKVYRSHFQERFVVYNCSTVCLYFVSIYV*EPVVDG*YWQVGCVCE 515
+D Y F++ V +C T C Y++S + + D YW++ E
Sbjct: 178 KDDYAQYMIPFRDINVATSCRTFCGYYISDDAIKHIADE-YWKITAAME 225
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = -2
Query: 525 TDYTHRHNQLANIIHQQLALKHKLIQNTNTPYYNYKPQTVLENDSCKLYYDRAILTDRTI 346
+DY +L+ + + + +H +NT+ K + L + KL A LTDR
Sbjct: 341 SDYDEIKRELSVLKQIEFSGEHATHENTSLESQLLKREKQLSEELAKLRSTNAQLTDRIT 400
Query: 345 HYNRPDITLQDKNNKVTYII 286
++ L+ K ++ +I
Sbjct: 401 QESKKASFLEQKASEQEEVI 420
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 345 HYNRPDITLQDKNNKVTYII 286
+Y RP +QD+NN ++Y++
Sbjct: 532 NYYRPHAQMQDQNNMMSYML 551
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 110 FKLLWMWFGTTPVVEIIIGTMYA 178
F W+W +P V I +YA
Sbjct: 104 FSAFWLWHHVSPAVPITFAYLYA 126
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = -2
Query: 402 ENDSCKLYYDRA 367
+++SCK+YYDRA
Sbjct: 1447 KSNSCKVYYDRA 1458
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +1
Query: 286 NNVGDFIVFIL*----SDIRSIVVNRPIGKNSAIIIKFTGV---IFKNGLWFI-IVVRCV 441
N +G F I+ +++ S V+N P+G + +GV +FKNG I + + C+
Sbjct: 317 NGIGVFSTLIIKGLGYNELHSAVLNMPLGAIEVAAMFISGVLCKVFKNGRLLIGVFMNCL 376
Query: 442 CI 447
+
Sbjct: 377 TL 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,172
Number of Sequences: 5004
Number of extensions: 45735
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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