Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0936
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 34 0.063
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 33 0.19
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 29 1.8
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 1.8
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677... 29 1.8
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 29 2.4
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 28 4.1
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 28 5.5
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 28 5.5
12_01_0391 - 3086802-3087292,3089198-3089322,3089421-3089633,308... 27 7.2
09_02_0214 + 5846531-5846872,5847660-5847708,5847975-5848090,584... 27 7.2
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 27 7.2
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 27 9.6
01_06_0224 - 27672201-27672336,27672439-27672507,27672948-276730... 27 9.6
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 34.3 bits (75), Expect = 0.063
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -2
Query: 309 NNKVTYIIDIAVPNTHNIQKTFTEKMTKYTELKEEIVRIWKQKKAYIVPIIISTTGVVPN 130
NN T I A+ +++ + E+ EI R+W+ KK Y+ S +GV+P
Sbjct: 528 NNGFTGRISPAISKAQRLKELWLHNNRLDGEIPREIGRLWRLKKLYLSN--NSFSGVIPP 585
Query: 129 HIHNSLKLLDL 97
I N KL +L
Sbjct: 586 EIGNLSKLTEL 596
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 50 VFRIAAFCSEINMLSFKSRSFKLLWMWFGTTPVVEIIIGTMYAF-FCFQILTISSLSSVY 226
+ IAA+C + M++ ++R + + W+ V+ I++G F + S SS++
Sbjct: 115 IIEIAAWCCMLVMIALETRIYIYEFRWYIRFVVIYILVGEAAMFNLVLSVRQYYSSSSIF 174
Query: 227 FVIFSVNVF*MLWVFGTAMSI 289
++ S +F +L FG M +
Sbjct: 175 YLYCSEIIFKLL--FGILMVV 193
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 522 DYTHRHNQLANIIHQQL-ALKHKLIQNTNTPYYNYKPQTVLENDSCKL 382
D T H+Q ++Q L ALK+ I N + + KP+ +L N +CKL
Sbjct: 133 DLTKEHHQF--FLYQMLRALKY--IHTANVYHRDLKPKNILANANCKL 176
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 11 FSSSCMNFLTILHVFRIAAFCSEINMLSFKSRSFKLL 121
FSSS +F I++FC E+ +LS K+R KL+
Sbjct: 2272 FSSSESSFADSHGTITISSFCKEVTVLSTKTRPKKLV 2308
>01_06_0168 +
27165323-27165373,27166659-27167067,27167666-27167793,
27167905-27167964,27169126-27169275,27169358-27169513,
27169643-27169854,27169983-27170084,27170351-27170430,
27170515-27170939
Length = 590
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 522 DYTHRHNQLANIIHQQL-ALKHKLIQNTNTPYYNYKPQTVLENDSCKL 382
D T H+Q ++Q L ALK+ I N + + KP+ +L N +CKL
Sbjct: 131 DLTKEHHQF--FLYQMLRALKY--IHTANVYHRDLKPKNILANANCKL 174
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 5 VWFSSSCMNFLTILHVFRIAAFCSEINMLSFKSRSFKLLWM-WFGTTPVVEII-IGTMYA 178
++F ++FL H+F +A +C + SF+ R+ +M FG T + I+ IG M
Sbjct: 61 LYFRKMDLDFL--FHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIP 118
Query: 179 FFCFQILTISSLSS 220
+ I LS+
Sbjct: 119 YISETFARILFLSN 132
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 522 DYTHRHNQLANIIHQQL-ALKHKLIQNTNTPYYNYKPQTVLENDSCKL 382
D T H Q ++Q L ALK+ I N + + KP+ +L N +CKL
Sbjct: 165 DLTKEHYQF--FLYQLLRALKY--IHTANVYHRDLKPKNILANSNCKL 208
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -2
Query: 276 VPNTHNIQKTFTEKMTKYTELKEEIVRI--WKQKKAYIVPIIISTTGVVPNHIHNSLKLL 103
+P+ HNI + FT+ + K K E+ + ++ I+I + N +H +++
Sbjct: 369 LPSVHNIDRLFTKLLEKCKAKKNEMNTLVHVSMQRVKSAQIVIKE---MMNELHAFQEVM 425
Query: 102 DLKDNIFISLQKAA 61
+D IF SL+ A+
Sbjct: 426 GHQDKIFDSLKLAS 439
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 477 QLALKHKLIQNTNTPYYNYKPQTVLENDSCKLY 379
+L LKHKL++ +Y++ ++ D+ K Y
Sbjct: 358 ELGLKHKLVKKLGGAFYSFNEESYRGKDALKSY 390
>12_01_0391 -
3086802-3087292,3089198-3089322,3089421-3089633,
3089726-3090711
Length = 604
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 372 RAILTD-RTIHYNRPDITLQDKNNKVTYIIDIAVPNTHNIQKTFTEKMTK 226
+AI+ D RT +N L+DK KVT I + P+ +I+ FT+ K
Sbjct: 25 KAIIADERTYKWNY----LKDKQKKVTLQIPVLYPSKSSIRPPFTQLTDK 70
>09_02_0214 +
5846531-5846872,5847660-5847708,5847975-5848090,
5848169-5848282,5849050-5849100,5849746-5849834,
5849911-5849971,5850103-5850180,5850334-5850441,
5850832-5850957
Length = 377
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 41 ILHVFRIAAFCSEINMLSFKSRSFKLLWMWFGTTPVVEIIIGTMYAFFCFQIL 199
I +F++ C+ + + + SR+ K+LW GT V+I G +Q+L
Sbjct: 250 ICSLFQLENGCAGVFVFAVNSRTPKILWRVDGTRGTVQIERGIASGKHGYQVL 302
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 339 NRPDITLQDKNNKVTYIIDIAVPNTHNIQKTFTEKMTKYTELKEE 205
+ P +T D N K + + PNT + T K++ E K+E
Sbjct: 609 SNPSVTDNDDNLKEESALSVEEPNTTSTSSKNTRKLSNAKESKDE 653
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 477 QLALKHKLIQNTNTPYYNYKPQTVLENDSCKL 382
QL K I + N + + KP+ +L N CKL
Sbjct: 302 QLLCALKYIHSANVFHRDLKPKNILANSDCKL 333
>01_06_0224 -
27672201-27672336,27672439-27672507,27672948-27673040,
27673245-27673336,27673491-27673577,27673734-27673832,
27673927-27674026,27674113-27674171,27674361-27674720
Length = 364
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = -3
Query: 401 KMTPVNFIMIALFLPIGRFTTIDRISLYKIKTIKSPTLLTLQSRIPTTFKKR 246
++TPV+ + FL I R ++D + + K +++PT L++++ ++ R
Sbjct: 117 RLTPVDEDSESGFLSINRAMSLDSVDVDLSKELQAPTRPILKTQVEAAWRGR 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,191
Number of Sequences: 37544
Number of extensions: 232241
Number of successful extensions: 640
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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