Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0935
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960     27   4.5  
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825...    26   7.8  

>04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960
          Length = 491

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 109 MNVHVDAKSIYIKMNCC-SLVSLKLENGWTD 198
           M ++   KS + K++C   L+ LK  NGW+D
Sbjct: 152 MPLYDGCKSKHSKLSCVLELMKLKASNGWSD 182


>02_05_0659 +
           30679809-30680253,30680699-30680715,30682373-30682530,
           30682570-30682846
          Length = 298

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 257 CLRLNLLWTSTNNSRPKLAKSVQP 186
           CL    LW ST +  P L +S  P
Sbjct: 6   CLACRFLWRSTPSPHPALGRSTTP 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,673,642
Number of Sequences: 37544
Number of extensions: 127327
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)