Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0935
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.28 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   0.87 
SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)                  27   3.5  
SB_48879| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-07)                 27   4.6  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             26   6.1  
SB_7952| Best HMM Match : F5_F8_type_C (HMM E-Value=0.48)              26   6.1  

>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 40  CFIPKLWLLFLFHSGILYEMVLLMNVHVDAKSIYI 144
           C    LWLL +F  G L  ++L++ ++VD  ++Y+
Sbjct: 848 CSNNHLWLLVIFFIGTLMLVLLILKINVDIFTVYL 882


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 11  FFCYCLIIIIVLFQNCGYCFYFILVYYMKWYC 106
           ++CYC       +  C YC+Y+   YY  +YC
Sbjct: 490 YYCYCYCYYCCYY--C-YCYYYYHHYYCCYYC 518



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
 Frame = +2

Query: 11  FFCYCLIIIIVLFQNCGYCFY-----FILVYYMKWYC 106
           ++CYC       +    YC+Y     +   YY  +YC
Sbjct: 478 YYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYC 514


>SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)
          Length = 301

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 LMNVHVDAKSIYIKMNC-CSLVSLKLENGWTDLANFGLELFVEVQRR 243
           LMN+HV  +SIY+  +  C     +L  G TDL   G E++    +R
Sbjct: 194 LMNLHVRKRSIYLVRHAECENNVHQLLGGDTDLTKRGDEVWTSQLKR 240


>SB_48879| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-07)
          Length = 368

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 239 LWTSTNNSRPKLAKSVQPFSSFSETNEQQFIFIYIDFAST 120
           L + TNN+R  +   V+P+ +  ++N + FI I+  ++ T
Sbjct: 162 LISQTNNARALILIIVKPYQTICQSNTRIFIDIFAVYSIT 201


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 142 IKMNCCSLV-SLKLE--NGWTDLANFGLELFVEVQRRFKRRQI*KCSE 276
           +KM+C S + SLK E      D+A     L  +V   FKR+QI  CS+
Sbjct: 186 VKMHCESQIDSLKFEISESIKDVAKQVSNLSNKVTSEFKRKQIEVCSQ 233


>SB_7952| Best HMM Match : F5_F8_type_C (HMM E-Value=0.48)
          Length = 117

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 AKSIYIKMNCCSLVSLKLENGWTDLANF 210
           ++ + I+ + CS++S+KLEN   D   F
Sbjct: 52  SQDVRIEFSDCSVISVKLENNLQDFNEF 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,519
Number of Sequences: 59808
Number of extensions: 166517
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)