Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0935
(323 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 30 0.33
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 26 5.4
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 26 5.4
U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine rece... 26 5.4
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 26 5.4
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 26 5.4
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 26 5.4
AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm rec... 26 7.2
Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL132949-18|CAB70109.2| 725|Caenorhabditis elegans Hypothetical... 25 9.5
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 42 FYSKIVVIVFISFWYTI*NGIVNECSCGCKVYIYKNELLFVSL 170
F+ K ++VF+ FWY I NG + VY+ L+F S+
Sbjct: 1066 FFYKNAMLVFVIFWYQIFNGFSAQVPID-PVYLMVYNLIFTSV 1107
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 197 SVQPFSSFSETNEQQFIFIYID 132
SVQ SS +E E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 197 SVQPFSSFSETNEQQFIFIYID 132
SVQ SS +E E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536
>U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein22 protein.
Length = 306
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 23 CLIIIIVLFQNCGYCFYFILVYYM 94
C++I I+ F N YC YFI + M
Sbjct: 43 CVLIGIMAFFNLFYCIYFIQLRVM 66
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 197 SVQPFSSFSETNEQQFIFIYID 132
SVQ SS +E E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 197 SVQPFSSFSETNEQQFIFIYID 132
SVQ SS +E E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 197 SVQPFSSFSETNEQQFIFIYID 132
SVQ SS +E E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536
>AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm
receptor protein 20 protein.
Length = 351
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 11 FFCYCLIIIIVLF--QNCGYCFYFILVY 88
FFC LIIIIV F +N G Y ++++
Sbjct: 30 FFCTILIIIIVKFSNKNVGSYKYLMIIF 57
>Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical
protein F13G3.2 protein.
Length = 336
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 188 PFSSFSETNEQQFIFI 141
PFS FS+T QF+F+
Sbjct: 181 PFSGFSDTRSFQFLFV 196
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 43 FIPKLWLLFLFHSGILYE 96
F+P +W L + HSGI +E
Sbjct: 659 FVPYVWRLSVQHSGIYFE 676
>AL132949-18|CAB70109.2| 725|Caenorhabditis elegans Hypothetical
protein Y53F4B.20 protein.
Length = 725
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 176 NSRTAGPIWLILVLNYLWKSRGGLNVDKYENARN*IKITTN 298
NS I++ +L+Y W GGL + N IKIT N
Sbjct: 460 NSTVDEDIYVSQLLHY-WHEHGGLPYMNVDRLANSIKITQN 499
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,337,541
Number of Sequences: 27780
Number of extensions: 138018
Number of successful extensions: 405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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