Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0935
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    30   0.41 
At4g23210.1 68417.m03347 protein kinase family protein contains ...    28   1.6  
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r...    27   2.9  
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    26   5.0  
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    26   5.0  
At1g03340.1 68414.m00313 expressed protein similar to hypothetic...    26   6.7  

>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 323 LKGKTKKQN---WLLFLFNSEHFHICLRLNLLWTSTNNSRPKLAKSV 192
           L+G T+KQ    W+ F+   ++  +  R+++LW+     +PK   S+
Sbjct: 689 LRGTTEKQGEKTWICFVVEGQNNKVMHRMDILWSLVQIFQPKATNSL 735


>At4g23210.1 68417.m03347 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 610

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 69  FISFWYTI*NGIVNECSCGCKVYIYKNELLFVSLAKTRERLD 194
           F+++  TI   IV+ C C CK++I    L FVS  +  E+ D
Sbjct: 569 FVTYVSTI---IVSHCCCNCKIWI--RSLNFVSGLEVMEKRD 605


>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
           protein-related identical to cDNA bHLH transcription
           factor (bHLH gamma gene) GI:32562999; weak similarity to
           bHLH transcription activator anthocyanin 1 [Petunia x
           hybrida] GI:10998404
          Length = 720

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 323 LKGKTKKQN---WLLFLFNSEHFHICLRLNLLWTSTNNSRPK 207
           L+G T+ Q    W+ F+  S++  +  R+++LW+     +PK
Sbjct: 674 LRGFTETQGEKTWICFVTESQNSKVMQRMDILWSLVQIFQPK 715


>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 284 LFNSEHFHICLRLNLLWTSTNNSRPKLAKSVQPFSSF 174
           L   ++F    R+N  WT    SRP L + V+  S++
Sbjct: 341 LKTEDYFPYADRINAYWTGYFTSRPALKRYVRVMSAY 377


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 284 LFNSEHFHICLRLNLLWTSTNNSRPKLAKSVQPFSSF 174
           L   ++F    R+N  WT    SRP L + V+  S++
Sbjct: 341 LKTEDYFPYADRINAYWTGYFTSRPALKRYVRVMSAY 377


>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
           protein GB:AAC79114
          Length = 385

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 251 RLNLLWTSTNNSRPKLAKSVQPFSSFSETN 162
           +  +L  S+ N + +L + ++PFSSFS++N
Sbjct: 37  KYEILPESSFNLKSQLLEPLKPFSSFSKSN 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,741,373
Number of Sequences: 28952
Number of extensions: 120580
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)