Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0934
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    27   3.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.7  

>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 170 KEMTLIDAINEDFYNFWKEGYEIKN 244
           K + + +AIN+DF  F  EG++ +N
Sbjct: 162 KGLNIPEAINKDFAQFLTEGFKARN 186


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 288 TCSTLKET-FITETLWSLPRNMEPMRRWPNN*ST*CMAAKSPLQLTMTSVSGPSVSRPAS 464
           T S++KET F+TETL   P N  P   +    ++     ++ +  T T +   +VS  AS
Sbjct: 139 TLSSVKETDFVTETLILSPDNQAPRMSFVGKPNSVAEIVRTVMHQTSTRI---NVS-TAS 194

Query: 465 KLKST 479
           K K+T
Sbjct: 195 KTKNT 199


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 50  IQGQIAL-ALMVYMAVGSVDASQEVMKNLSLNFGKALDECKKEMTLIDAINEDFYNFWKE 226
           IQ  I+L A  VY  +   +A+  + K  ++ FG  LDE K E  +I +    F+     
Sbjct: 286 IQLPISLYANSVYSTMAYAEATSNLAKYNTIAFGNCLDE-KFEEEIISSTARSFF----L 340

Query: 227 GYEIKNR 247
           G E+K R
Sbjct: 341 GDEVKKR 347


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 454 RDTEGPDTLVIVSWSGLFAAMHYVDQLLGHR 362
           R TEG    ++       AAMHY+D  L HR
Sbjct: 156 RLTEGEILKILADVCDAVAAMHYLDPPLIHR 186


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 176  MTLIDAINEDFYNFWKEGYEIKNRE 250
            +T  + +  + YNFWK  Y  +N E
Sbjct: 2043 ITFTELLKNEDYNFWKHPYIKRNDE 2067


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,309
Number of Sequences: 5004
Number of extensions: 53343
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)