Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0934
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0771 - 7013343-7013861                                           31   0.82 
12_01_0415 + 3292576-3293727                                           30   1.9  
11_01_0407 + 3090880-3092010                                           30   1.9  
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527     28   5.8  
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15...    28   7.6  

>12_01_0771 - 7013343-7013861
          Length = 172

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +2

Query: 98  SVDASQEVMKNLSLNFGKALDECKKEMTLIDAINEDFYNF 217
           +VD  + V+ +L L  G+  D+C++ ++++DA  +   +F
Sbjct: 116 TVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDF 155


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 456 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 346
           +A PR   H + LA   ++  C + +  WA+V++ PC
Sbjct: 219 LAAPRA--HEAGLAAPVYAMGCVLHLVAWALVAAVPC 253


>11_01_0407 + 3090880-3092010
          Length = 376

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 456 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 346
           +A PR   H   L    +S  C + ++ WA+V++ PC
Sbjct: 212 LAAPRA--HEGGLVAPVYSMGCLLHLAAWALVAAVPC 246


>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
          Length = 1015

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
 Frame = +2

Query: 179 TLIDAINEDFYNFWKEGYEIKNRETGCAIMCLSTKLNMLDP------EGNLHHGNAMEFA 340
           TL++ +    Y F +E +E++ R     I  +  +L M+         G ++HG  ++ A
Sbjct: 8   TLLNMLGPKLYTFLQENHELR-RNLEHDIRYIRNELRMIGAVIDEHERGQMNHGGPLQGA 66

Query: 341 KKHGADETMAQQLIDIV-HGCEKSTPANDDKCIWTLGVATCFKAEIHKL 484
             HGA E +A  + D +     + T  +    + T+ V T F   I KL
Sbjct: 67  WIHGARE-LAYDMEDCIDRFMHRMTSGHR---LATMAVRTKFATVIQKL 111


>10_01_0013 +
           154098-154101,154513-154673,154773-154847,155071-155571,
           155873-156214,158107-158234,158296-158342,160117-160196,
           160569-160654,161409-161556,161947-162082,162160-162488,
           162953-163169,164547-164572
          Length = 759

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = +2

Query: 116 EVMKNLSLNFGKALDECKKEMTLIDAINEDFYNFWKEGYEIKNRETGCAIMCLSTKLNML 295
           EVM+  S++FGK L+E ++ + +++          +        E G   +C  +  N  
Sbjct: 542 EVMEKQSIDFGKVLEEIQESLVVLNLKQGAARGSVRSASTNGAHEQGFKFVCGESFPNSS 601

Query: 296 DPEGNLHHGNAMEFA 340
             +G    G+A  +A
Sbjct: 602 SVDGRGEEGSATPYA 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,071
Number of Sequences: 37544
Number of extensions: 350696
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)