Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0934
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative ribo...    30   1.3  
Z92829-1|CAB07339.1|  161|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83109-5|CAB05514.1|  161|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical
           protein T13H5.7 protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 68  LALMVYMA-VGSVDASQEVMKNLSLNFGKALDECKKEMTLIDAINED 205
           L  MVY A +  +D + E +KNL ++  KAL+E K+E  + + +NED
Sbjct: 35  LGPMVYAAAISPLDQNVE-LKNLGVDDSKALNEAKRE-EIFNKMNED 79


>AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative
           ribonuclease H2 largesubunit protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 68  LALMVYMA-VGSVDASQEVMKNLSLNFGKALDECKKEMTLIDAINED 205
           L  MVY A +  +D + E +KNL ++  KAL+E K+E  + + +NED
Sbjct: 35  LGPMVYAAAISPLDQNVE-LKNLGVDDSKALNEAKRE-EIFNKMNED 79


>Z92829-1|CAB07339.1|  161|Caenorhabditis elegans Hypothetical
           protein F10A3.1 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 492 AQFNLWISALKQVATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC-FLANSIA 325
           A F+L ++ L   A   + ++L +L   +++   T+  S W  V++A C F+A  +A
Sbjct: 95  AFFSLMVTILTVTAVILIGVNLPNL-NYNYNDNATLGYSAWVSVAAAVCYFIAAGLA 150


>Z83109-5|CAB05514.1|  161|Caenorhabditis elegans Hypothetical
           protein F44G3.10 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 492 AQFNLWISALKQVATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPCFLANS 331
           A F L ++ L  VA   + ++L S     +    T+  S W  V+ A CF   S
Sbjct: 95  AMFALMVTILTVVAVILIGVNLPSFNDYWYDD-ATLGYSAWVSVAGAVCFFVES 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,393
Number of Sequences: 27780
Number of extensions: 298901
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)