Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0934
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05990.1 68414.m00627 calcium-binding protein, putative stron...    32   0.30 
At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identica...    32   0.39 
At1g53110.1 68414.m06014 expressed protein                             29   3.6  
At2g34100.1 68415.m04175 expressed protein  similar to the Asp-r...    28   6.4  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    27   8.4  

>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
           similarity to calcium-binding protein [Lotus japonicus]
           GI:18413495; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 150

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 98  SVDASQEVMKNLSLNFGKALDECKKEMTLIDAINEDFYNF 217
           +VD  + V+ +L L  GK LD+CKK +  +D   +   N+
Sbjct: 96  TVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNY 135


>At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identical
           to calmodulin-like MSS3 from GI:9965747 [Arabidopsis
           thaliana]
          Length = 215

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 98  SVDASQEVMKNLSLNFGKALDECKKEMTLIDAINEDFYNF 217
           +V+  + VM +L L  GK LD CKK +  +DA  +   N+
Sbjct: 160 TVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNY 199


>At1g53110.1 68414.m06014 expressed protein
          Length = 439

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 65  ALALMVYMAVGSVDASQEVMKNLSLNFGKALDECKKEMTLID 190
           ++  ++ M +  V+  QEV++      G+ L E K E+ L+D
Sbjct: 103 SMETLMSMKINEVEKEQEVVRGRIYRLGERLSEIKMEIELLD 144


>At2g34100.1 68415.m04175 expressed protein  similar to the Asp-rich
           region of GP|1633572|U52064
          Length = 345

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +2

Query: 116 EVMKNLSLNFGKALDECKKEMTLIDAINEDFYNFWKEGYEIKNRETGCAIMCLSTKLNML 295
           +++K+  L+F +  +E   +   +D  +ED  + W E ++ ++ E    +   S  ++ L
Sbjct: 163 QLLKSGYLSFDEEEEEDNDDEEDVDIFSEDSDDSWNEDFDDEDEEADTTVFKYSENMSEL 222

Query: 296 D 298
           D
Sbjct: 223 D 223


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 221 KEGYEIKNRETGCAIMCLSTKLNMLDPEGNLHHGNAMEFAKKHGAD 358
           + G ++  R       CL  +  +L P+ +L+H    +F+ KH AD
Sbjct: 85  RHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLNHSEISKFS-KHDAD 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,610
Number of Sequences: 28952
Number of extensions: 283980
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)