Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0933
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   1.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   2.4  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   9.8  

>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 361 GYLYYYINIQW--FLRMLRYNY*TVHPIDLKLGIHVENTCT*WIG*YL 224
           GY+  + ++ W  FL  L+  Y   HP+DL L   +   C  ++G Y+
Sbjct: 262 GYMLSFGDLVWVPFLYSLQARYLAFHPVDLGLVKTLAILCLQFLGYYI 309


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 268 YQVSSQSDARFSSYNGASVKTTVYLYNSIDSLVFKIVYSSLTK 396
           Y+V  +S  +F ++  A      Y+ N IDSL   + +S++ K
Sbjct: 261 YRVLIESFMKFGNFEEAEKLAYSYVKNKIDSLSSDVFFSAILK 303


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 374 LFTHLLQSKMISNILCRVK-GQLEARQSRVAD 466
           L  HL+ SK ++NILC VK  +  AR  R+ +
Sbjct: 421 LLYHLIHSKNLTNILCFVKSNEAAARLHRLLE 452


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 HVNISLSIKYMYFLHGYQVSSQSDAR 297
           H NI+ ++KY++   G  +  QSD +
Sbjct: 396 HENINNNVKYVFLAAGSSLKGQSDLK 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,402
Number of Sequences: 5004
Number of extensions: 42615
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)