Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0933
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    29   3.3  
10_01_0168 - 1883380-1883594,1884572-1888325                           29   3.3  

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 196 NCCREPNNHVNISLSIKYMYFLHGYQVSSQSDARFSSYNGASVKTTVYLYNSIDSLVFK 372
           N  REPN  +N       ++FL  Y V+ + D     Y+GA  K TV    ++  L+ K
Sbjct: 426 NKSREPNKEINDKSLYNSLFFLRVYMVAHRDDL-IKGYSGA--KETVEDRKAVVRLLMK 481


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 368  LKLFTHLLQSKMISNI--LCRVKGQLEARQSRVADHCSR 478
            L    H L+  +I     LC V GQL+A +  + DHC++
Sbjct: 1134 LDALNHSLKKLLIFGCEKLCSVSGQLDALKRLIIDHCNK 1172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,633
Number of Sequences: 37544
Number of extensions: 247086
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)