Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0933
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                29   4.5  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 212

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 151 IISHPHKDSHH*RLRNCCREPNNHVNI-SLSIKYMYFLHGYQVSSQSDARFSSYNGASVK 327
           ++ H    + H    N   +   HV+  + + +   ++H Y  +SQ+     +YN  S  
Sbjct: 48  LVQHQATPTRHVHTNNTTSQATRHVHTYNTTSQASRYVHTYNTTSQATRHVHTYNTTSQA 107

Query: 328 TT-VYLYNS 351
           T  V+ YN+
Sbjct: 108 TRYVHTYNT 116


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/64 (20%), Positives = 35/64 (54%)
 Frame = +1

Query: 205  REPNNHVNISLSIKYMYFLHGYQVSSQSDARFSSYNGASVKTTVYLYNSIDSLVFKIVYS 384
            R P++   ++L++ ++ + HGY+ + ++  + +     S++   Y +   DS + K ++S
Sbjct: 1097 RAPDSTFGLTLAVAWVTYHHGYRGTPETCPQTTGIPVESLRLWGYKWRKCDSTLAKQLFS 1156

Query: 385  SLTK 396
             L +
Sbjct: 1157 VLVQ 1160


>SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 FLHGYQVSSQSDARFSSYNGASVKTT-VYLYNSIDSLVFKIVYSSLT 393
           ++H Y  +SQ+     +YN  S  T  V+ YN+  S   +IVY+S T
Sbjct: 69  YVHTYNTTSQASLYVHTYNTTSQATRHVHTYNT-TSQATRIVYTSNT 114


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +1

Query: 40  VHCSLKIRRR**AVIIFSIYIFTSCTRPLRWA 135
           ++C ++   +   +I+F++ +F SC+ P  W+
Sbjct: 4   LNCDVRFNAQAVVLILFTLILFASCSMPYSWS 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,486
Number of Sequences: 59808
Number of extensions: 307813
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)