Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0932
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    29   5.3  
Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 215 LKSFTETPKDGAII-KFRFIFLSKLKIGPYYYGNTLKVSKLLPRSYRAFVIFQRTNIIQH 39
           L  F++ P+  +I  +F  IF+  +   P +  + LK+S+  P S++ + I + + +++ 
Sbjct: 247 LPIFSQLPRIFSIFHRFPPIFMDFMPFSPLFPPSFLKISRKPPMSHKRYTIDEASEVMKS 306

Query: 38  AN 33
            N
Sbjct: 307 FN 308


>Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical
           protein F53H4.1 protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 125 YGNTLKVSKLLPRSYRAFV-IFQRTNIIQHANI 30
           YGN+ +V++++ R  +AFV I   TNI  H  I
Sbjct: 471 YGNSHQVNEIIERRLKAFVGINHLTNICNHPGI 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,631
Number of Sequences: 27780
Number of extensions: 263416
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)