Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0931
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.4  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    27   3.4  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.9  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   7.9  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 211  ICKAISNHKRHRNNKITNYKILTIGLWMCI 122
            + +  SNHK H N  +     LT+  +MC+
Sbjct: 924  VVELCSNHKSHNNQSLLLAASLTLSKFMCL 953


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = -3

Query: 298 IL*MSLIFSSICSNKLSLKTLMLVFMLGSICKAISNHKRHRNNKITNYKILTIG 137
           IL + LI ++  ++   + +L LV + GS  +A ++H+R +     N  +LT+G
Sbjct: 337 ILQVFLIRNNPTAHTSQISSLSLVDLAGSE-RASAHHERRKEGAFINKSLLTLG 389


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 447 VPLREIWEQVKE---RLKEVLHILYEFLKTF 530
           V LR++W+ V+E    L+ VL ++YE    F
Sbjct: 580 VDLRKVWDSVREWRSNLRGVLQLVYETFPKF 610


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 495  VLHILYEFLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTE 617
            VLH + +  + F +SDYIR   +      + + + ++ L E
Sbjct: 1649 VLHKIVDHREAFPISDYIRRAYVLSELEKSIRMEKLLGLVE 1689


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 305 HANIINVAYFQQYLFQ*TFIENSNV 231
           H N+   +YF  Y    TF+EN+N+
Sbjct: 279 HNNVRGCSYFYSYQAVCTFLENNNL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,136
Number of Sequences: 5004
Number of extensions: 37162
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)