Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0927
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    29   0.27 
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.9  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   3.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   3.3  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   4.4  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   4.4  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   5.8  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   5.8  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   IIHSGIYIFQLMDYYAASLSITYLAFFEVVAIAWFYG 112
           +I + +YI   +    +S +I+  AFFE+VA  WF G
Sbjct: 509 VIGAALYIPLSLIESRSSFTISMQAFFEIVAAFWFNG 545


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 311 LSLLCIPVYAVIVVFRAPGENLLEKLRY 394
           + L+C   YAV+V F  PG+ +  KL +
Sbjct: 128 IGLVCNDQYAVVVPFTLPGDIVKAKLHF 155


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 160 RTSTCHLFNVSRKSPHSIEP 101
           + STC LF VSR   HS+ P
Sbjct: 118 KCSTCGLFRVSRIDLHSVHP 137


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +2

Query: 182 WLIATPALLIALWVASLVD--YTPPSYRQ--YQYPAWAQAIGWIIASLSLLCIPVYAVIV 349
           W I +P +LIA++   L+   Y  PS+     Q    A+   W+ A L+LL   +YA+ +
Sbjct: 366 WSILSPCILIAVYTNLLLQHLYPTPSFTSPVNQILCSAEIWRWVSAILTLL---LYAIEL 422

Query: 350 VF 355
            +
Sbjct: 423 AY 424


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 353 FRAPGENLLEKLRYFHSPEF 412
           + +P EN+L+++R+F  P+F
Sbjct: 333 YNSPMENMLKEVRFFGKPKF 352


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 170 FRFCWLIATPALLIALWVASLVDYTPPSY 256
           F   +L+   +++ ALW+ S+VD   P+Y
Sbjct: 249 FSEAFLLDVCSIITALWLKSVVDPNTPAY 277


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 246 PPATGSTNIQHGHKQLVGLSPPF 314
           PP+TG T I  G  Q +G   PF
Sbjct: 73  PPSTGKTAIAMGMAQSLGSDTPF 95


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 467 SFGFRAAYITTIHATVANRTRANG 396
           +FG     +TT+HAT A +   +G
Sbjct: 167 TFGIEEGLMTTVHATTATQKTVDG 190


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 467 SFGFRAAYITTIHATVANRTRANG 396
           +FG     +TT+HAT A +   +G
Sbjct: 167 TFGIEEGLMTTVHATTATQKTVDG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,232
Number of Sequences: 5004
Number of extensions: 49252
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)