Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0927
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0267 - 16246512-16246689,16247047-16247183,16247376-162474... 32 0.20
07_03_1202 - 24796142-24796342 29 1.4
08_01_0234 + 1914155-1914326,1914474-1914634,1914757-1914904,191... 29 2.5
08_01_0230 + 1837700-1837871,1838035-1838195,1838329-1838476,183... 29 2.5
06_03_1358 - 29548440-29549315 29 2.5
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 28 3.3
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 7.6
09_06_0017 - 20248672-20248783,20248982-20249229,20249314-202494... 27 7.6
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 27 7.6
>09_04_0267 -
16246512-16246689,16247047-16247183,16247376-16247471,
16247658-16248579,16249396-16249455,16249860-16250125
Length = 552
Score = 32.3 bits (70), Expect = 0.20
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Frame = +2
Query: 50 ASLSITY-LAFFEVVAIAWFYGVGRLSRNIKQMTGRRP----SIYFRFCWLIATPALLIA 214
A L + Y +A + + W + L++ + ++ RR IY +F +A L+
Sbjct: 385 ARLFLVYPVAILDAAFVVWIFI--SLAKTLDKLQARRSMAKLDIYRKFTIALAVTVLVSI 442
Query: 215 LWVASLVDY--TPPSYRQYQYPAWAQAIGWIIASLSLLCIPVY 337
W+ + + T ++QY AW W + S SLLC+ Y
Sbjct: 443 GWIGYEIYFKSTDVFNERWQY-AWIIPAFWHVLSFSLLCVISY 484
>07_03_1202 - 24796142-24796342
Length = 66
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 281 AQAIGWIIASLSLLCIPVYAVIVVFRAPGE--NLLEKLRYFHSPEFYLRLWR 430
A A + A++SLL PV A +V+ + PG +L+ ++ + +P+ Y L R
Sbjct: 10 AAAAAVVGAAVSLLLWPVAAPVVMMKGPGAAGHLISRVAFEANPKLYYYLLR 61
>08_01_0234 +
1914155-1914326,1914474-1914634,1914757-1914904,
1915221-1915357
Length = 205
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +2
Query: 278 WAQAIGWIIA------SLSLLCIPVYAVIVVFRAPGENLLEKLRY 394
WAQ I ++ S+ + C+P AVI + PG +L KL Y
Sbjct: 95 WAQPITYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLY 139
>08_01_0230 +
1837700-1837871,1838035-1838195,1838329-1838476,
1838802-1839002,1839301-1839416,1839463-1839501
Length = 278
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +2
Query: 278 WAQAIGWIIA------SLSLLCIPVYAVIVVFRAPGENLLEKLRY 394
WAQ I ++ S+ + C+P AVI + PG +L KL Y
Sbjct: 95 WAQPITYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLY 139
>06_03_1358 - 29548440-29549315
Length = 291
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 350 RLLQRTQECIIRKGRR*SNQLLVP--MLDIGTAGSWGEYNRR 231
+ LQRT RK RR +L IG AG WG+ NRR
Sbjct: 190 KTLQRTPTGSGRKSRRAGVAAAADDDVLGIGDAGEWGDENRR 231
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 320 LCIPVYAVIVVFRAPGENLLEKLRYFHSPEFYLR 421
LC V+ V +A G+ KLRYF +P +LR
Sbjct: 822 LCSCKTHVVSVEKAAGDGYFRKLRYFSTPCSFLR 855
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.1 bits (57), Expect = 7.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 143 MTGRRPSIYFRFCWLIATPALLIALWVASLVDYTPPSYRQYQYPAWAQAIGWIIASLSLL 322
+ R P+ +FCWLI P W + + P ++ Q P+ ++ G + A L LL
Sbjct: 67 LLSRVPNSAPKFCWLIVMPG-----WFSG---WCCPGFQVQQLPS-SKGTGLVFAMLLLL 117
Query: 323 -CIPVYAVIVVFRA 361
+ YA I +FRA
Sbjct: 118 HQVDTYAGI-IFRA 130
>09_06_0017 -
20248672-20248783,20248982-20249229,20249314-20249480,
20249916-20250079,20251275-20251555
Length = 323
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 245 PPSYRQYQYPAWAQAIGWIIASLSLLCIPVYAVIVVFRAPGEN 373
PP Y+ YQY + W++A + LL V +++++F+ N
Sbjct: 266 PPKYKAYQY------VLWVVAFVLLLVGFVVSLVMLFKGKNGN 302
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 335 YAVIVVFRAPGENLLEKLRYFHSPE 409
Y ++ F A E+ EKL+YF SPE
Sbjct: 294 YITVMSFFATAEHEKEKLQYFASPE 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,078
Number of Sequences: 37544
Number of extensions: 324206
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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