Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0927
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...   117   7e-29
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...   117   7e-29
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   0.94 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   5.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score =  117 bits (281), Expect = 7e-29
 Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
 Frame = +2

Query: 2   IIHSGIYIFQLMDYYAAS-LSITYLAFFEVVAIAWFYGVGRLSRNIKQMTGRRPSIYFRF 178
           I   G+Y+FQL+D YA S   + +L FFE +AI+W +GV R    I+ M G  P  +++ 
Sbjct: 434 ITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKI 493

Query: 179 CWLIATPALLIALWVASLVDYTPPSYRQYQYPAWAQAIGWIIASLSLLCIPVYAVIVVFR 358
           CW I TPA+ + ++  +++ + P  Y  Y+YP W+  +GW+    S+LCIP Y + + F 
Sbjct: 494 CWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFT 553

Query: 359 APGENLLEKLR 391
             G  + EK R
Sbjct: 554 TSG-TISEKFR 563


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score =  117 bits (281), Expect = 7e-29
 Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
 Frame = +2

Query: 2   IIHSGIYIFQLMDYYAAS-LSITYLAFFEVVAIAWFYGVGRLSRNIKQMTGRRPSIYFRF 178
           I   G+Y+FQL+D YA S   + +L FFE +AI+W +GV R    I+ M G  P  +++ 
Sbjct: 487 ITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKI 546

Query: 179 CWLIATPALLIALWVASLVDYTPPSYRQYQYPAWAQAIGWIIASLSLLCIPVYAVIVVFR 358
           CW I TPA+ + ++  +++ + P  Y  Y+YP W+  +GW+    S+LCIP Y + + F 
Sbjct: 547 CWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFT 606

Query: 359 APGENLLEKLR 391
             G  + EK R
Sbjct: 607 TSG-TISEKFR 616


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 184 PTKSEIN*RTSTCHLFNVSRKSPHSIEPSYGN 89
           PT  EIN       LFN++  + HSI    G+
Sbjct: 87  PTTQEINKPFKRLELFNITTTTIHSIHSIDGD 118


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 430 TPQSQIELGRMEIT*FLK*IFPGCSKYDYY 341
           T  + + LG MEI  F+   FPG  K  ++
Sbjct: 225 TKAAVMRLGLMEIIKFVNIFFPGGKKTTFF 254


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 348 SYLEHPGKIYLRNYVISI 401
           +Y  +  K+Y +NY+I+I
Sbjct: 96  NYNNYNKKLYYKNYIINI 113


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 348 SYLEHPGKIYLRNYVISI 401
           +Y  +  K+Y +NY+I+I
Sbjct: 337 NYNNYNKKLYYKNYIINI 354


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 348 SYLEHPGKIYLRNYVISI 401
           +Y  +  K+Y +NY+I+I
Sbjct: 332 NYNNYNKKLYYKNYIINI 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 193 YTCSINSTMGGKS 231
           Y C +N+++GG+S
Sbjct: 285 YLCIVNNSVGGES 297


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 242 TPPSYRQYQY 271
           TPPSY Q  Y
Sbjct: 538 TPPSYNQLNY 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,760
Number of Sequences: 438
Number of extensions: 3466
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)