Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0925
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   3.4  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    27   4.5  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 115 LPYIEVTVLHKYIHNFKIK--CKNTNI*KYY 29
           +PYIE+T  H Y  +FK K  C N    K Y
Sbjct: 245 MPYIEITSKHNYDIDFKYKWLCINEKCNKLY 275


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 323 KAPSTHSYGWEKGIRT 370
           K  S H YGW+KG++T
Sbjct: 718 KITSMHFYGWKKGLKT 733


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 847 EFRWPQKSSVPSYISQL*YNLQNIFKTSIVSSKLSNP 737
           +F +P  +S P++ S L  +     KTS+  SKL +P
Sbjct: 181 QFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSP 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,757
Number of Sequences: 5004
Number of extensions: 73394
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)