Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0925
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               29   6.3  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   28   8.4  
SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)              28   8.4  

>SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 277 YGQVVFKNTLLHTSAKGTKYPFIWMGERNSNISSACYLYTTSRLCESVVFRNNGLFY*LK 456
           Y Q   +N L     KG   PFIW  ER+       Y+  TS  CE  +  ++ +F+ L 
Sbjct: 381 YTQKSIQNLLEKRKQKGHDAPFIWGEERHRKNVRFGYITGTSFFCEYQI--SSYIFFQLP 438

Query: 457 G 459
           G
Sbjct: 439 G 439


>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -1

Query: 313 CAKVYF*RLPDHNIFMDTVRRVIFVRKFTYTQLLRWSYAMVSNET 179
           C + Y+  +PD   F+ TV  ++F+ + +    ++ +Y M +  T
Sbjct: 37  CPRYYYLCIPDKGTFLGTVLAILFLIEKSVISFMKCTYVMYAQLT 81


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 813  VIFLNFNII-YKIFLKHQLYHQSCQTLLMSTRYFKLV-TVKNISSIILRESQW 661
            V  LN N++ Y+   + +L       L M++ + +L+ T+ NI   ILR  QW
Sbjct: 1189 VNILNLNLVRYRSTRRARLTTTKSDLLAMNSAFLRLLPTLVNIFDAILRNGQW 1241


>SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)
          Length = 757

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 676 KRKS--MVYIDFNLTHYFVKALAPWRDNISQHVLFIHPNIIDTK 551
           KR+S  +V + F+  H       P+R+NI+  V+F  P+  D K
Sbjct: 436 KRRSDQLVNLAFSARHQLTSITKPFRENIAALVVFYTPSKADMK 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,720,007
Number of Sequences: 59808
Number of extensions: 508462
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)