Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0924
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28350.2 68418.m03443 expressed protein                             29   2.6  
At5g28350.1 68418.m03442 expressed protein                             29   2.6  
At3g61480.1 68416.m06885 expressed protein                             28   8.1  

>At5g28350.2 68418.m03443 expressed protein
          Length = 1087

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 316 IYDCYNDYLLINYMLFYVICYTISI 390
           + D Y DY+L++Y+ F++  Y + I
Sbjct: 507 VMDVYQDYILVSYLPFFIHVYHVKI 531


>At5g28350.1 68418.m03442 expressed protein
          Length = 1127

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 316 IYDCYNDYLLINYMLFYVICYTISI 390
           + D Y DY+L++Y+ F++  Y + I
Sbjct: 547 VMDVYQDYILVSYLPFFIHVYHVKI 571


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 IYDCYNDYLLINYMLFYVICYTISI 390
           + D Y DY+L++Y+ F +  Y + I
Sbjct: 501 VMDVYQDYILVSYLPFIIHVYHVKI 525


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,058,523
Number of Sequences: 28952
Number of extensions: 191035
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)