Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0923
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR...    29   4.3  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   5.6  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 22  AFIFIGYVQFEFAFSWNVLCVCYS 93
           A +F G + F  A   N+LC+CYS
Sbjct: 375 AMLFAGILGFGMAMCLNLLCICYS 398


>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1036

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 729 SWTLDRSPV---CVKKYIIIIIQHFYRVEICDIKALVHNVFIYFK 604
           SW LD       C +++  I+I  FYRV+  D+K L  N    FK
Sbjct: 101 SWCLDELVEIMKCKEEFSQIVIPIFYRVDPSDVKKLTGNFGNVFK 145


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 72  RIVCLLFIIYVLQLIYTDDVVFDSGNFFTILSRPQ 176
           R   ++F  Y+L ++YT+   FD+GNF+ I   P+
Sbjct: 279 RASVVVFHNYLLPILYTE---FDAGNFYVIPGSPE 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,244
Number of Sequences: 28952
Number of extensions: 204623
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)