Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0922
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    32   0.46 
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    28   7.5  
At1g50280.1 68414.m05637 phototropic-responsive NPH3 family prot...    28   7.5  

>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 638 NKHMSLLLCLYCIQPCPTKDIRRCSLLVL 724
           +  MS  +C YC++ CP K +  CS L+L
Sbjct: 649 SNRMSRSICSYCVKHCPYKIVYMCSGLIL 677


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 598 CARKYFGEEMTETK*AHVSLVVLILHTALPN*RYSSLFTVGIILFYVN 741
           C+R  F E  ++    H+++ +    + +P  +YS+  TVG I+ Y N
Sbjct: 32  CSRTLFLETYSKDHHDHINIFIHSYTSPVPYPKYSTYDTVGQIMGYCN 79


>At1g50280.1 68414.m05637 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 525

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 88  NLTPEI*LNFLLLI-KWRGT*HGIILTFHLQYYLISKIQTLS 210
           NL+P+I L  +++I  ++     ++LT  L +YL +K+QT S
Sbjct: 208 NLSPKIILKLVMIIGAYKTNIKSLVLTRFLLHYLKTKLQTKS 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,828
Number of Sequences: 28952
Number of extensions: 257577
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)