Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0921
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    30   0.44 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.1  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    26   5.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   5.4  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.4  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   7.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   9.4  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   9.4  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   9.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 252 LEGQAKGVKTCKFSSIKIDLE---KEIGGYEFTCDIDIEGKYKVFSESPLIKNLLGGTTV 422
           +EG + G +  K S +K+ L+   KE+  + F+ +     KY+V     + KN L   T 
Sbjct: 57  IEGHSSGFEALK-SLLKVCLKLGVKEVSAFTFSIENFKRSKYEVDMLMEIAKNSLTQITA 115

Query: 423 HGE 431
           HG+
Sbjct: 116 HGD 118


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 75  VDTLGKCSLKDEECTKSLINNAL-NEISSTGIPELDIPPVDPIALKNVSVTVLGLV 239
           +D LG      +  TKSL NN+L NE     +P  D   +  ++ +    T L  V
Sbjct: 255 LDNLGMTFCASQALTKSLENNSLDNESCVRVVPSFDHEEIGSVSAQGAESTFLPAV 310


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +3

Query: 192 DPIALKNVSVTVLGLVDITLLEGQAKGVKTCKFSSIKIDLEKEIGGYEFTCDIDIEGKYK 371
           D +   ++ V  +G+      +   KGV         I    +  GY  T DID E   +
Sbjct: 200 DIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGINSIPDATKKSGYRLTGDIDFENAKE 259

Query: 372 VFSESPLIKNLLGGTTV 422
           V S    +   +G  TV
Sbjct: 260 VASAITPVPGSVGPMTV 276


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 81  TLGKCSLKDEECTKSLINNALNEISSTGIP 170
           TL +C++  ++C+K LIN   N  ++ G P
Sbjct: 539 TLIECNIDQDDCSKELINWGHNVGAANGKP 568


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +3

Query: 141 LNEISSTGIPELDIPPVDPIALKNVSV 221
           +++ +S  +PEL+ PP++ + L+++ V
Sbjct: 1   MSDTTSLNVPELESPPIERVELESLLV 27


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 733 PKNFEV*L*KISMALSKKLLPKVSMTNFQFSFKNVVTS-LLASCS 602
           P+N+   +  IS   ++KL+  +S+ N  ++ K  +TS LL  C+
Sbjct: 53  PRNYHKFVDTISRKPTRKLVHHISLNNVSYASKASITSRLLRRCA 97


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 532 IVKLSTIIKFWERQSFMLTISSWVNKKL 615
           ++ LS ++   E ++F LTI +W+++++
Sbjct: 403 MITLSLVLTESELEAFKLTIKAWIHRRM 430


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 124  LFVHSSSLREHFPRVSTNAASPKTIKPKRKINIRAI 17
            L +   ++R+HFP+    +    T+    K+NI AI
Sbjct: 1235 LHILDITIRKHFPQFDNFSPELSTVTEAAKLNIEAI 1270


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 359 REV*SVFRKPSYKELVGR---HDRPWRRKWKSSIRKTTNQYEISRV 487
           R++  +   PS K  V      DRP RR+    IRK   QY ++ +
Sbjct: 350 RKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 421 TVVPPNKFFIRGLSENTLYFPSISISQVNSYPPISFSK 308
           T +P N + ++  +   LY     IS+  SY P+  +K
Sbjct: 356 TQLPENTYVLKEETSMVLYDEQCKISESPSYSPVKLAK 393


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 294 SIKIDLEKEIGGY--EFTCDIDIEGKY---KVFSESPLIKNLLGGTTVHGEGNGKVQLEK 458
           S+K+++E E+ G+    + + DIE +        + P +     G   H  GN   QL  
Sbjct: 53  SVKMEVE-EVNGHVDSSSTETDIEMQVIQQPTIPKKPPVSAHRRGPRKH-RGNANSQLNL 110

Query: 459 LQISMKFPVYA--QKRDDGEIYMKCD 530
                + P+Y   QK DDG   + CD
Sbjct: 111 STADHQRPLYCICQKPDDGSWMLGCD 136


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 29/95 (30%), Positives = 39/95 (41%)
 Frame = -2

Query: 361  PSISISQVNSYPPISFSKSIFIELNLQVFTPFA*PSSNVMSTSPRTVTETFFKAMGSTGG 182
            P  S S +NS  PIS S  I   + +   +  +  SS V S S  +        + S+GG
Sbjct: 3467 PITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNS------SLLSSSGG 3520

Query: 181  ISNSGIPVDDISFRALLIRLFVHSSSLREHFPRVS 77
             S+S       SF        V SSSL    P +S
Sbjct: 3521 FSSSAFSTGSSSFSLTSENGSVSSSSLVSSSPVLS 3555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,108
Number of Sequences: 5004
Number of extensions: 72601
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)