Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0919
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    29   0.89 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.89 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   6.3  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    25   8.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   8.3  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 241 KILSQSFAGITAVLHVEVIMTKASLNRQETVVQFIFAF-----SRSGFSNNGRPITRSND 77
           ++  + +  I   + +EVI  K S +R ET+ QF+  F     +   F++    + R  D
Sbjct: 244 RMFPEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPSSQVYRDAD 303

Query: 76  FLR 68
           FL+
Sbjct: 304 FLK 306


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -2

Query: 436 YKIFMKHNIQSRYILKMIMKLLMNDEYLIMTGNAMKCRNSTTLPAFILK 290
           +K+F ++ + +    + I+  + N + LI++G+   C  ST +PAF+L+
Sbjct: 624 FKVF-RNQLPATMFRETIIDAVNNSQLLIISGDT-GCGKSTQIPAFLLE 670


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 62  IESQKVVTSSNRPPIIRETGPRECEDKLNNCFLAVQ 169
           +E  ++VT  N P  +  T PR  +D  N+C  A++
Sbjct: 278 LEMIQIVTKMNIPDHLTATLPRSSDDIQNDCLFALR 313


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 283 HKVVVPFIYFIVE*KILSQSFAGITAVLHVEVIMTKASLNRQETVVQFIFAFSRSGFSNN 104
           H+V++ F+  I E K   +    + +VL   +      +N+QET ++F F +S++  S  
Sbjct: 89  HRVLLYFVDSIHEKKDYIE-IINVLSVLTSCLEEYGNQINQQETFIRFFFKYSKTNLSYG 147

Query: 103 GRPI 92
            R I
Sbjct: 148 VRSI 151


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/93 (21%), Positives = 42/93 (45%)
 Frame = -2

Query: 568 YNHIYIRYRDFENNTHTNTKFILLK*RIKITVESIYIIKLDFLHYKIFMKHNIQSRYILK 389
           Y+ ++  +    +++  N KF+LL   I +TV ++ ++       +   + ++  +  L 
Sbjct: 194 YSKVFFLHLLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLAQFDLNGKSFLY 253

Query: 388 MIMKLLMNDEYLIMTGNAMKCRNSTTLPAFILK 290
            ++  L N   +  T +  K R ST    FI K
Sbjct: 254 HMLVSLHNQ--VTNTSHLEKQRISTVATLFISK 284


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 503 NKFSISMCIIFEIPISYI--NVIIFRFIMTFRYYSILNYRKKKLELVNVICLL 655
           N FSIS+ + + I + ++   V++  F   F Y+    YR  ++  +  I +L
Sbjct: 50  NLFSISIGLFYLIGVHHLYDGVLVLLFDALFTYFVAAFYRSSRMPWIIFIVIL 102


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 188 NFYVQNCCNSCKGL*KYLSFYDEVNERYH 274
           NF++    + C  + +   FYDE   RY+
Sbjct: 116 NFFILRGNHECASINRIYGFYDECKRRYN 144


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 404 ALYSKNDYETTDERRIPYY 348
           A+Y+ N Y  TD+   PYY
Sbjct: 398 AIYAANPYNHTDDSYYPYY 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,643
Number of Sequences: 5004
Number of extensions: 47616
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)