Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0918
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 35 0.012
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.57
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.76
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 27 2.3
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 27 3.1
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 27 4.0
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 5.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.4
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.4
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 9.4
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|... 25 9.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 25 9.4
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 35.1 bits (77), Expect = 0.012
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 131 ISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRFEVRDSRGALLLGAGQDSVTIGA 310
+++E + ++ R GLL FLG + +++ + D ALLLG DS +
Sbjct: 208 VAVEFRKRLNIGDRVKDGLLYKDAFLGSEAVDVLMHIVRTTDRNLALLLGRALDSQKMFH 267
Query: 311 DTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLE 430
D +T S +L Q + +PP ++S S+E
Sbjct: 268 D-VTYSHRLRDSLKEVYQYRRIISPPPGLSSMDSNGSSIE 306
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.5 bits (63), Expect = 0.57
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = -2
Query: 372 SEVWTAVFSVTPAELETVSVSAPMVTES*PAPSSNAPLESLTSKRPTLSSKRS*PKNNLL 193
S + T +V P + S ++ + + S PSS + S + +SKRS +L+
Sbjct: 970 SSINTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLV 1029
Query: 192 CSNPCASRVDTEKFLVDSMEI 130
SNP + V E + + +I
Sbjct: 1030 QSNPVKTVVSLESYKFTTSKI 1050
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 446 FGLHAFLMIL*ETPALMVSLGVPLQVKSGLRYSVSLQLNWKPL 318
+G H L L P + LG+P+++ SGL + +L++ W L
Sbjct: 31 WGGHVSLHNLRIKPEALDKLGIPIEITSGLIGTFTLEIPWSNL 73
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 415 YKIIRNACSPKHSFGVKSWRHKCELPH 495
+++ R CS HS + +WRH + H
Sbjct: 95 FQVYREVCSACHSLNLIAWRHLVGVTH 121
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -2
Query: 477 MSPALDSKAMFWAACISNDLVGDSSTNGFAGGAFTSEVWTAVFSVTPAELETVS 316
M P D +FW A I + G A F E + ++ + P + TV+
Sbjct: 652 MQPQFDKSPLFWNALILDAFSGTHKNKDIAQRRF--ETFQTIYDLLPVDENTVA 703
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 570 RLYHCHHQHSTRTIPITRTFISCVHVQTGNYS 665
R YH H++H+ + ++RTF S H++ S
Sbjct: 22 RFYHQHYEHTGK---LSRTFFSPTHIKYNRLS 50
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.4
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 513 DLSLKVVRQLALMSPALDSKAMFWAACISNDLVGDSSTNGFAGGAFTSEVWTAVFSVTPA 334
++S ++ + A+MS A D+ + AC + + SS+ S+ V S +
Sbjct: 52 NISWRLWYREAMMSDANDACQI---ACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFN 108
Query: 333 ELETVSVSAPMVTE-S*PAPSSNAPLESLTSKRPTLSSKR 217
++ VSV+AP+V E S AP S+ + SS R
Sbjct: 109 RIDNVSVNAPIVNEVSLQAPMKGGSHSSIVRPQAKRSSSR 148
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 414 GDSSTNGFAGGAFTSEVWTAVFSVTPAELETVSVSAPMVTES*PAPS---SNAPLESLTS 244
G + G+A +SE ++FS + ET S S+P+ + S PA S S+ S TS
Sbjct: 68 GTPTYYGYATPTSSSE--PSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTS 125
Query: 243 KRPTLSSKRS 214
T SS S
Sbjct: 126 SEYTPSSTES 135
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.4
Identities = 28/103 (27%), Positives = 40/103 (38%)
Frame = -2
Query: 369 EVWTAVFSVTPAELETVSVSAPMVTES*PAPSSNAPLESLTSKRPTLSSKRS*PKNNLLC 190
E W + + E +V P VT + APS A L S T S++ ++L
Sbjct: 179 EAWKRMMKASSGEAGAGNVITPGVTSTTGAPSGKASLSRAASNSST-SARAGISVDSLFG 237
Query: 189 SNPCASRVDTEKFLVDSMEIG*PLRDLILDVNRESSTNACPSS 61
A + T V S G P R + ES +A PS+
Sbjct: 238 KRSAAQAMATVVPSV-STPGGTPPRFASPALTVESMVHAAPST 279
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 221 LELNVGRFEVRDSRGALLLGAGQD 292
LELN G FEVR + G LG G+D
Sbjct: 252 LELNNGVFEVRSTNGDTHLG-GED 274
>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 167 TRDAQGLLQSRLFLGHDRLELN 232
TRDAQG L++ L + +D L+ N
Sbjct: 95 TRDAQGNLKTSLLVDYDCLDAN 116
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 592 STAPARSPSPEHLSV 636
S P RSPSP HLS+
Sbjct: 354 SGRPRRSPSPSHLSI 368
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 323 VSSSAGVTLNTAVQTSLVKAPPAKPLVLESPT 418
+SS++ +V T V PPA P+V E+P+
Sbjct: 497 ISSASQKAAQPSVITPSVPQPPAAPVVPEAPS 528
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 28 GSAQNS-SWRIAATRAS-ISTRFSIYIKYQISERSTDFHRIYQKL 156
GSA + S +++ T ++ +S R S Y + S+R+ DFHRI++ L
Sbjct: 163 GSAITAPSRKVSITSSNGVSARLSGYA-FANSKRNRDFHRIFKVL 206
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 276 SSNAPLESLTSKRPTLSSKRS*PKNNLLCSN 184
S NAP E LTSK PT+SS S N + SN
Sbjct: 82 SLNAPSE-LTSKNPTVSSTTS-SANPAIVSN 110
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 415 YKIIRNACSPKHSFGV-KSWRHKCELPHNLQT 507
++ R A K+S G + W KCE+P Q+
Sbjct: 107 FEAARQATPEKNSLGAFEFWYQKCEIPMTFQS 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,457
Number of Sequences: 5004
Number of extensions: 69420
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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