Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0918
(790 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06) 58 6e-09
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.35
SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2) 31 0.80
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6) 31 1.4
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 31 1.4
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022) 30 2.5
SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087) 30 2.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14) 30 2.5
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40) 29 3.2
SB_14132| Best HMM Match : dCMP_cyt_deam (HMM E-Value=7.6e-05) 29 3.2
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 29 4.3
SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4) 29 5.7
SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05) 29 5.7
SB_4400| Best HMM Match : Borrelia_P13 (HMM E-Value=1.6) 28 7.5
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14) 28 7.5
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18) 28 9.9
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 28 9.9
SB_29441| Best HMM Match : MFS_1 (HMM E-Value=1.6e-12) 28 9.9
SB_27500| Best HMM Match : WD40 (HMM E-Value=3.5e-05) 28 9.9
>SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)
Length = 436
Score = 58.4 bits (135), Expect = 6e-09
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +2
Query: 338 GVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGDISASCLTTFRLRSI 517
G +VQT V++PP + L LES TR L ++A + I +++ AG IS LT +RS
Sbjct: 322 GAEFTGSVQTKAVRSPPKEHLTLESLTRQLHLNAPEGIQVKTVAGGISLQSLTDVNIRSK 381
Query: 518 AGSIRLDAPSIYM 556
G I LDA SI +
Sbjct: 382 KGKITLDAQSIML 394
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 GALLLGAGQDSVTIGADT-LTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHA 439
GA L GAG S+ +G DT + VS + A+ T + A P LE PT S +M
Sbjct: 924 GASLGGAGATSIAVGTDTSMDVSRAEAANAMEALATVVAAAESVSP--LEIPTISQQMAE 981
Query: 440 A 442
A
Sbjct: 982 A 982
>SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 352
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 305 GADTLTVSSSAGVTL--NTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGDI 478
G L +SSS L NTA+ T + PPA +L +P L + N+ + I
Sbjct: 112 GVKNLMISSSIPGPLKGNTALNTGISNLPPAVEALLSTPAAELSIKPQVNLGNNCASAII 171
Query: 479 SASC 490
++C
Sbjct: 172 PSNC 175
>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
Length = 147
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -2
Query: 303 MVTES*PAPSSNAPLESLTSKRPTLSSKR-S*PKNNLLCSNPCA--SRVDTEKFLVDSME 133
+V E P+P S +S T RP+ SS R S ++N + + CA +D E +E
Sbjct: 58 VVDEPKPSPKSPTKSKSQTDSRPSSSSSRLSETRSNNILTAVCALVKELDRESLEEVKLE 117
Query: 132 IG*PLRDLILDVNRESSTNA 73
+ L D + R+S A
Sbjct: 118 VEKRLHDCSSNAERDSDGGA 137
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 GQDSVTIGA-DTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSL 427
G + +G+ D LT+SSS T T+ +TS V + P+V S +RS+
Sbjct: 320 GVEQTLLGSTDILTLSSSTTETSGTSAKTSPVTSASEMPVVTSSGSRSV 368
>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
Length = 645
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 543 GASKRIDPAMDLSLKVVRQLALMSPALDSKAMFWAAC 433
G+ +R+ + D+ L + R L L AL AMFWAAC
Sbjct: 435 GSPQRLPVSYDIMLVIFRSLDL---ALLDHAMFWAAC 468
>SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)
Length = 897
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 543 GASKRIDPAMDLSLKVVRQLALMSPALDSKAMFWAAC 433
G+ +R+ + D+ L + R L L AL AMFWAAC
Sbjct: 687 GSPQRLPVSYDIMLVIFRSLDL---ALLDHAMFWAAC 720
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 111 LILDVNRESSTNACPSSCNPPG 46
L+ D + SST +CPS+C+P G
Sbjct: 1389 LLADNGQHSSTASCPSACSPSG 1410
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 296 VTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAGD 475
V++ ++T T S+S TL T+ TSL A P L S +++L+ + +
Sbjct: 232 VSVSSNT-TTSASVQKTLTTSASTSLAVAQPHTSLATSSNSQALKTETLNSSSASPAVST 290
Query: 476 ISAS 487
SAS
Sbjct: 291 ASAS 294
>SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 842
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 543 GASKRIDPAMDLSLKVVRQLALMSPALDSKAMFWAAC 433
G+ +R+ + D+ L + R L L AL AMFWAAC
Sbjct: 429 GSPQRLPVSYDIMLVIFRSLDL---ALLDHAMFWAAC 462
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 96 LHQVSNLGEVNRFPSNLPETSQCQLEMHRD 185
LH N G + R P +L +T C+ ++H D
Sbjct: 140 LHNYINFGRLRRRPMSLNKTHYCKCKLHND 169
>SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)
Length = 372
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -3
Query: 290 LDRLPVATLLLNLSLQSDQR*VLNGHDLRIIYF 192
L R ++ +L N L+ D++ +L GH++ ++YF
Sbjct: 263 LFRRSLSAILKNGELREDKKLILEGHEVAVVYF 295
>SB_14132| Best HMM Match : dCMP_cyt_deam (HMM E-Value=7.6e-05)
Length = 423
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 559 EIEIGSTIATISTAPARSPSPEHLSVVCMCKRETIPSTTAW 681
++E + + P R+P PE S C + +PS +W
Sbjct: 214 DVEFAEIDHNLKSKPIRNPGPEGASEECPLLKSPVPSEPSW 254
>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
Length = 602
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 236 GRFEVRDSRGALLLG--AGQDSVTIGADTLTVSSSA-GVTLNTAVQTSLVKAPPAKPLVL 406
G RDS+ LL G D VT+ ++ SSS TLNT + K KP+V
Sbjct: 115 GHIPYRDSKLTKLLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRAKKIKNKPVVQ 174
Query: 407 ESPTRSLEMHAAQNIAL 457
P L M + I L
Sbjct: 175 MDPKERLIMTLKREIKL 191
>SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4)
Length = 308
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 540 ASKRIDPAMDLSLKVVRQLALMSPALDSKAMFWAAC 433
A +R+ + D+ L + R L L AL AMFWAAC
Sbjct: 175 APQRLPVSYDIMLVIFRSLDL---ALLDHAMFWAAC 207
>SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05)
Length = 515
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 540 ASKRIDPAMDLSLKVVRQLALMSPALDSKAMFWAAC 433
A +R+ + D+ L + R L L AL AMFWAAC
Sbjct: 286 APQRLPVSYDIMLVIFRSLDL---ALLDHAMFWAAC 318
>SB_4400| Best HMM Match : Borrelia_P13 (HMM E-Value=1.6)
Length = 250
Score = 28.3 bits (60), Expect = 7.5
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 529 TFRRT*YLHAEIEIGSTIATISTAPARSPSPEHLSVVCMCKRETIPSTTA-WDLRGQGGE 705
T + T YLH +G+ A + P P P H S+ IP+T+ L GGE
Sbjct: 14 TTQYTQYLHFIFALGAFFAPVLAKPLLLPDPSHTSI--SINVTAIPNTSGNGILAVLGGE 71
Query: 706 ---PHLSMIIFSSVDIGV 750
P S F S D+ V
Sbjct: 72 TLVPSYSPAWFISGDVNV 89
>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
Length = 499
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 510 LSLKVVRQLALMSPALDSKAMFWAACISNDLVGDSSTNGFAGGAFTSEVWTAVFSVTPAE 331
LS V L+ P LDS A L+G + NGFA G + + V+ V+ +T
Sbjct: 345 LSTMVAGVSTLLVPQLDSFA---------GLIGYFTVNGFANGGYATAVFMIVYQMTIPR 395
Query: 330 LET 322
+ T
Sbjct: 396 MRT 398
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 360 TAVFSVTPAELETVSVSAPMVTES*PAPSSNAPLESLTSKRPTLSS 223
TA + P+ ++ +VS P V + PS+NAP+ R T+ S
Sbjct: 298 TATIAPPPSRVDASTVSIPTVRPTVTVPSNNAPVVISRLSRVTVYS 343
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 9.9
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Frame = -3
Query: 620 GDGDRAGAVLMVAMVEPISISAC--KY*VRLNVSIRLWISV*RL*GSSHL----CRQLLT 459
G+G +++ A++ P+ +S C + + L V IRL + S L Q+LT
Sbjct: 56 GEGTSTSSLMSSALLTPLQVSLCPLQVLIALQVLIRLQVLTPLQVSLSPLQVLIALQVLT 115
Query: 458 PKLCFGLHAFLMIL*ETPALMVSLGVPLQVKSGLRYSVSLQL 333
P L A L +L TP L VSL PLQV L+ + LQ+
Sbjct: 116 P---LQLLAPLQVL--TP-LQVSLS-PLQVLIALQVLIPLQV 150
>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
Length = 1067
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 510 LSLKVVRQLALMSPALDSKAMFWAACISNDLVGDSSTNGFAGGAFTSEVWTAVFSVT 340
LS V L+ P LDS A L+G + NGFA G + + V+ V+ +T
Sbjct: 148 LSTMVAGVSTLLVPQLDSFA---------GLIGYFTVNGFANGGYATAVFMIVYQIT 195
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 321 VSVSAPMVTES*PAPSSNAPLESLTSKRPTLSSKRS*PKNNLLCSNPCA 175
+ ++ P ++S + SSN P + +P+ SS ++ PK ++ +N A
Sbjct: 372 LKLTVPSASKSITSSSSNEPCKPKKGPKPSTSSTKTSPKTSVTKTNKTA 420
>SB_29441| Best HMM Match : MFS_1 (HMM E-Value=1.6e-12)
Length = 473
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 510 LSLKVVRQLALMSPALDSKAMFWAACISNDLVGDSSTNGFAGGAFTSEVWTAVFSVT 340
LS V L+ P LDS A L+G + NGFA G + + V+ V+ +T
Sbjct: 316 LSTMVAGVSTLLVPQLDSFA---------GLIGYFTVNGFANGGYATAVFMIVYQIT 363
>SB_27500| Best HMM Match : WD40 (HMM E-Value=3.5e-05)
Length = 196
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 203 FLGHDRLELNVGR-FEVRDSRGALLLGAGQDSVT 301
+LGH+ E+ G F V D +LL GAGQDSVT
Sbjct: 107 YLGHNN-EITHGLPFHV-DPTDSLLFGAGQDSVT 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,414,270
Number of Sequences: 59808
Number of extensions: 551167
Number of successful extensions: 1661
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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