Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0918
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.9  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 323 VSSSAGVTLNTAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALES 463
           VSS +   ++T    S++  PP + L    P  ++  H  Q +  E+
Sbjct: 76  VSSHSSNGIHTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQTLTSEN 122


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 680 HAVVLGIVSRLHMHTTDKC 624
           H+VV G + RLH + TD C
Sbjct: 703 HSVVSGALDRLH-YETDPC 720


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 257 SRGALLLGAGQDSVTIGADTLTVSSSAGVTLNTAVQTSLV 376
           S G ++ GA   S+ +GA+        G+    +   SLV
Sbjct: 26  SAGGVVTGASGGSIVVGANNGGGGGGLGIASGLSAMLSLV 65


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 353 TAVQTSLVKAPPAKPLVLESPTRSLEMHAAQNIALESRAG 472
           T   T  V  PP   ++ +    S  +  AQNIA+++  G
Sbjct: 146 TRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQG 185


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 633 SCVHVQTGNYS 665
           S +H+ TGNYS
Sbjct: 198 STIHLSTGNYS 208


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 635 LCACANGKLFLA 670
           +C+ +NG+LFLA
Sbjct: 29  VCSASNGELFLA 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,366
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)