Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0918
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54390.2 68414.m06202 PHD finger protein-related contains low...    33   0.22 
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    31   0.87 
At4g00200.1 68417.m00021 DNA-binding family protein contains a A...    28   6.1  
At5g26740.2 68418.m03164 expressed protein contains Pfam profile...    28   8.1  
At5g26740.1 68418.m03163 expressed protein contains Pfam profile...    28   8.1  
At3g49590.2 68416.m05420 expressed protein                             28   8.1  
At3g49590.1 68416.m05419 expressed protein                             28   8.1  
At3g12870.1 68416.m01604 expressed protein                             28   8.1  

>At1g54390.2 68414.m06202 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 328

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 595 TAPARSPSPEHLSVVCMCKRETIPSTTAWDLRGQGGEPHLSMIIFSS 735
           TAP    S  H +++C C++  + S+ A  L  Q  + HLS    SS
Sbjct: 279 TAPPADSSHSHTNIICTCEKVPLASSLAPSLHDQCHQTHLSCYPTSS 325


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 80   VLDSLFTSSIKSRRGQPISIESTRNFSVSTRDAQGLLQSRLFLGHDRLELNVGRF 244
            VL  LF  S K  + +P+ +  +RNF      A  L  + + +G  +LEL +G F
Sbjct: 1280 VLAGLFKLS-KDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFF 1333


>At4g00200.1 68417.m00021 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 345

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 442 PKHSFGVKSWRHKCELPHNLQTEIH 516
           P  SFG+ SW +  ++P N  T+I+
Sbjct: 315 PPSSFGISSWTNGQDMPRNSATDIN 339


>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 234 TLSSKRS*PKNNLLCSNPCASRVDTEKFLVDSMEIG*PLRDL-ILDVNRESSTNACPSS 61
           +LSS+ S PK++ + S+P  S       LVD+ +    + D+ ++D++  S  +  PS+
Sbjct: 358 SLSSEASSPKSSSVTSDPARSDAVKSSLLVDASDSLETMYDMSLIDIDLSSFPSNVPSA 416


>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 234 TLSSKRS*PKNNLLCSNPCASRVDTEKFLVDSMEIG*PLRDL-ILDVNRESSTNACPSS 61
           +LSS+ S PK++ + S+P  S       LVD+ +    + D+ ++D++  S  +  PS+
Sbjct: 358 SLSSEASSPKSSSVTSDPARSDAVKSSLLVDASDSLETMYDMSLIDIDLSSFPSNVPSA 416


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 293 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPL-VLESPTRSLEMHA 439
           SVT  +D    +  A +TL   + T  V +P   P+    SP RS+E H+
Sbjct: 219 SVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHS 268


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 293 SVTIGADTLTVSSSAGVTLNTAVQTSLVKAPPAKPL-VLESPTRSLEMHA 439
           SVT  +D    +  A +TL   + T  V +P   P+    SP RS+E H+
Sbjct: 219 SVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHS 268


>At3g12870.1 68416.m01604 expressed protein
          Length = 206

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
 Frame = +1

Query: 376 KGTPSETISAGVSYKIIRNACSPKHSFGVKSWRHKCELPHNLQTEIHSRIDTFRR-T*YL 552
           + T    + A   + + + A +P H   +K W  + EL  +  +   S+ID+ RR    L
Sbjct: 5   QSTNPPIMEAKTRHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQL 64

Query: 553 HAEIEIGSTIATISTAPARSPSPEHLSVVCMCKRETIPSTTA--------WDLRGQGG-E 705
           +    +  +I+ +    A S S    S    CKR  IPS  A        W +R +   E
Sbjct: 65  YIFFFLFHSISLLLLFHASSSSSSSAS-SSACKRSWIPSLCALLSSLGIIWAVRYKSEVE 123

Query: 706 PHLSMIIFSSVDIGVLFIFCVRKLE 780
            HL  ++    +   L   CV +L+
Sbjct: 124 SHLEKLLEREKEDAKLLRKCVEELK 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,772
Number of Sequences: 28952
Number of extensions: 381176
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)