Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0917
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.31 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   0.93 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   0.93 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   0.93 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   8.7  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -2

Query: 120 SYSGSPVHHSICPVLL----PKCN 61
           S+ G P+HH I P +L    P CN
Sbjct: 91  SHHGPPIHHQIRPPILHDTQPMCN 114


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 120 SYSGSPVHHSICPVLL 73
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 120 SYSGSPVHHSICPVLL 73
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 120 SYSGSPVHHSICPVLL 73
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 360 CNWRFSRKGCIDWSKPKI 413
           C+W  +   C DW K ++
Sbjct: 222 CDWVRNVPECADWYKGRL 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,898
Number of Sequences: 336
Number of extensions: 1998
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)