Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0917
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    29   0.23 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   0.40 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   1.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   3.8  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   3.8  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   5.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.0  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    24   8.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    24   8.7  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 214 AVDVLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRSAVTVIGDSQERAA 390
           A+  LH+ A+ RG+GN +++       IS   ++ FAS+    S  +V   G   ++A+
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFSVISSGPDVQKAS 212


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 45  DREFIYYTLEATQDKLNDALEILNNLLSNQEFRP 146
           +RE  YY L+   +KL++ +  LN  L ++   P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 223  VLHKAAYRRGLGNSLFISPKRINDISSESLQ 315
            V  K ++RRGL N +  S KR+ D   E ++
Sbjct: 1107 VAGKESFRRGLNNRVKFSNKRVRDDYDEEME 1137


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 15  SHGAYVSASGDREFIYYTLEATQDKLNDALEILNN 119
           +HG+ +S  G+ E+   T  AT++K  + LEILNN
Sbjct: 23  THGSLISQRGN-EYDGIT-PATKEKNQNKLEILNN 55


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 142 LNSWFESKLFRISSASFNLSC 80
           L+SWF SKL ++S+      C
Sbjct: 62  LSSWFNSKLSKLSAGYLQFDC 82


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 337 TPSRSAVTVIGDSQERAALIGQNLKLTSSD 426
           TP ++   V+  +Q  A LIG   +LT SD
Sbjct: 227 TPEKTKAQVLRIAQNTAKLIGLEKELTESD 256


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/71 (19%), Positives = 33/71 (46%)
 Frame = +1

Query: 130 TKSSDHG*LNDNAPRLKYDIISLPPQIRAVDVLHKAAYRRGLGNSLFISPKRINDISSES 309
           T  +D    N++  R  Y  + L   +  V ++H   + + + +  + +PK+I+D     
Sbjct: 716 TSDNDKYSFNNSVYRNAYKRMLLDDPLPPVFIIHLKRFFQEISHDGYANPKKISDFIEFE 775

Query: 310 LQLFASQNITP 342
            +L  ++ + P
Sbjct: 776 QELDLNEFVMP 786


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 PRLKYDIISLPPQIRAVDVLHKAAYRRGLGNSL-FISPKRINDISSESL 312
           PR KYD++SL     A  +   + +   L   L ++S      I+SESL
Sbjct: 226 PRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESL 274


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 87  KLNDALEILNNLLSNQEFRPWVT 155
           KLND  EILN +L   + + W++
Sbjct: 833 KLNDENEILNFVLETNDGKRWLS 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,720
Number of Sequences: 5004
Number of extensions: 35114
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)