Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0917
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 35 0.032
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 29 1.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 27 6.4
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 27 6.4
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 27 6.4
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 27 8.5
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 27 8.5
03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412 27 8.5
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 34.7 bits (76), Expect = 0.032
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +1
Query: 154 LNDNAPRLKYDI--ISLPPQIRAVDVLHKAAYRRGLGNSLFISPKRINDISSESLQLFAS 327
+ + ++K +I +S P ++ LH A Y L L S +N + +L+ F S
Sbjct: 235 VKEQLQKIKSEISEVSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVS 294
Query: 328 QNITPSRSAVTVIGDSQERAALIGQNL 408
+N T R + G + + + L
Sbjct: 295 ENYTAPRMVLAASGIEHDELVSVAEPL 321
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 21 GAYVSASGDREFIYYTLEATQDKLNDALEILNNLLSNQEFRPW 149
G VSAS RE + YT +A + + + +E+L + + N F W
Sbjct: 139 GGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNW 181
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 334 CSGLQKAEETLMKYH*SSLAR*RASYPVHDDRLPYGAHLQHEFGVVEK 191
CSG + A M + +S+ R A++ + +P G H H G+++K
Sbjct: 680 CSGAEIARFVAMLRNPASILRACAAFALLQFTIPGGRHAVHHAGLLQK 727
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 98 IIQFVLCCFQ-SVIDEFSVSRSTNICS 21
+I +VL CFQ SVI F V S++ CS
Sbjct: 159 VISYVLVCFQSSVILRFMVFFSSDFCS 185
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 196 LPPQIRAVDVLH----KAAYRRGL-GNSLFISPKRINDISSES 309
L PQ+ D H K+ Y+ + GNS F + K IND SS+S
Sbjct: 154 LTPQLNTEDTEHLPLVKSVYQSAIRGNSPFQNIKSINDGSSDS 196
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 26.6 bits (56), Expect = 8.5
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +1
Query: 154 LNDNAPRLKYDIISLPPQIRAVDVLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQN 333
L D A RLK PP +H+ RR +GN + ++ D+S +++
Sbjct: 85 LQDYAARLKK-----PPWWSLPCTVHRE--RRRIGNEMKELRAKVEDVSQRNMRYHGVSA 137
Query: 334 ITPSRSAVTVIGDSQERAAL 393
P S+VT Q AA+
Sbjct: 138 AAPQSSSVTAAELLQSTAAI 157
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 244 RRGLGNSLFISPKRINDISSESLQLFASQNITPSRSAVTVIGDSQERAALIGQNLKLT 417
RRG+ + +I P D+ S LQL A Q SR + + + +AAL+G+ +LT
Sbjct: 449 RRGMMGNGYIPPTDQEDLVSLKLQLEAGQVKLQSR----LEEEEEAKAALMGRIQRLT 502
>03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412
Length = 342
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 208 IRAVDVLHKAAYRRGLGNSLFISPKRINDIS--SESLQLFASQNITPSRSAVTVI 366
+RA++ + + R S FISP RI IS +L + +S PS A+ I
Sbjct: 192 LRAIECIFASIKGRSFPPSAFISPNRIARISFHFRNLVVISSVGYQPSTIALAAI 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,968
Number of Sequences: 37544
Number of extensions: 215907
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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