Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0917
(430 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 28 3.8
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07) 28 3.8
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 28 3.8
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038) 28 3.8
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016) 27 8.7
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 30.3 bits (65), Expect = 0.71
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 226 LHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRSA 354
LH A RR S I+ R + ES+++ A QN+ PSRSA
Sbjct: 83 LHMDA-RRKESRSDIIAKNRSLTLDGESIRITAKQNVPPSRSA 124
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 253 VHDDRLPYGAHLQHEFGVVEK*YHISVEEHYH*VTHG 143
+ DD P+GAH +F + Y S + YH HG
Sbjct: 10 IGDDVKPFGAHRPSDFSIPTLKYSPSGSDFYHRYVHG 46
>SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G + ST++G
Sbjct: 45 LWRDENRRTRRKTLGAKVRPTNSTHVG 71
>SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G + ST++G
Sbjct: 70 LWRDENRRTRRKTLGAKVRPTNSTHVG 96
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 599 LWRDENRRTRRKTLGAKARPTNSTHVG 625
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 57 LWRDENRRTRRKTLGAKARPTNSTHVG 83
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 1248 LWRDENRRTRRKTLGAKARPTNSTHVG 1274
>SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07)
Length = 305
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 77 LWRDENRRTRRKTLGAKARPTNSTHVG 103
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 285 LWRDENRRTRRKTLGAKARPTNSTHVG 311
>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
Length = 406
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 282 LWRDEERVTQSTTIGCLMEHIYSTNLG 202
LWRDE R T+ T+G ST++G
Sbjct: 355 LWRDENRRTRRKTLGAKARPTNSTHVG 381
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 118 TYFQTKSSDHG*LNDNAPRLKYDIISLPPQIRAVDVLHKAAYRRGLGNSLFISPKRI--N 291
T + ++DH ND P D+ + + +V +L + A+RRGLG + K +
Sbjct: 443 TKLERVTTDH---NDKKPLYAGDLRLI---VSSVKILSRDAFRRGLGEADIAQAKTLAKK 496
Query: 292 DISSESLQLFASQNITPSRSAVTVIGDSQ 378
E+ L S ++ + A IGDSQ
Sbjct: 497 FAEREANDLIESLDMMADQLA-EAIGDSQ 524
>SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)
Length = 277
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 232 KAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRSAVTVIGD 372
KA R + S + KRIN + +Q +A N P+R+ + V+GD
Sbjct: 109 KAHGPRIMTASFYTKKKRIN---MDIIQCYAPTNDNPTRNIIIVMGD 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,993
Number of Sequences: 59808
Number of extensions: 245962
Number of successful extensions: 453
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -