Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0917
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   0.83 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 236 QPIVVDWVTRSSSRQR 283
           QPI   W+TRS +R++
Sbjct: 81  QPISYKWITRSGTREQ 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 187 IISLPPQIRAVDVLHKAAYRRGLGNSLFISPKRIND--ISSESLQLFAS 327
           +I L  Q+   + +H ++  R L +S+F   +R+N   +S   L LF S
Sbjct: 294 MICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCS 342


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 182 YFSRGALSLSY 150
           YF+RG LS SY
Sbjct: 206 YFNRGLLSASY 216


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 182 YFSRGALSLSY 150
           YF+RG LS SY
Sbjct: 82  YFNRGLLSASY 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,808
Number of Sequences: 438
Number of extensions: 2136
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)