Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0917
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    31   0.44 
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    30   0.58 
At4g23510.1 68417.m03388 disease resistance protein (TIR class),...    28   3.1  
At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin, p...    27   4.1  
At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin, p...    27   4.1  
At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containi...    27   4.1  
At5g25970.1 68418.m03089 hypothetical protein contains Pfam prof...    27   5.4  
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    27   5.4  
At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putati...    27   7.1  
At4g00330.1 68417.m00042 protein kinase family protein contains ...    26   9.4  

>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 21  GAYVSASGDREFIYYTLEATQDKLNDALEILNNLLSNQEFRPW 149
           G   SAS  RE + YT++A +  + + +E+L + + N  F  W
Sbjct: 147 GGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDW 189


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 21  GAYVSASGDREFIYYTLEATQDKLNDALEILNNLLSNQEFRPW 149
           G   SAS  RE + YT++A +  + + +E+L + + N  F  W
Sbjct: 143 GGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDW 185


>At4g23510.1 68417.m03388 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 220 DVLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRSAVTVI 366
           D L   A R GL   L      ++DI ++  +LFAS+    + +A TV+
Sbjct: 475 DALSSIASRPGLSYELSTDDVFVSDIVTKVNELFASRERKKTEAATTVV 523


>At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 429

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 30  VSASGDREFIYYTLEATQDKLNDALEILNNLLSNQEFRPWV 152
           V  SGDR F   T     DK  DA+EIL       ++ PWV
Sbjct: 199 VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWV 238


>At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 610

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 30  VSASGDREFIYYTLEATQDKLNDALEILNNLLSNQEFRPWV 152
           V  SGDR F   T     DK  DA+EIL       ++ PWV
Sbjct: 199 VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWV 238


>At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 459

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 51  EFIYYTLEATQDKLNDALEILNNLLSNQEFRP 146
           EF++  L AT    ND+L   N   SN  + P
Sbjct: 78  EFVFRVLRATSRSSNDSLRFFNWARSNPSYTP 109


>At5g25970.1 68418.m03089 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 436

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 239 AALWSTSTARIWGGREIISYFSRGALSLSYPWSELLV 129
           A LW +   ++  G+EI+   SR  L+ ++P+  LL+
Sbjct: 48  AILWCSRVLQLEEGKEIVVTSSRTGLTKAFPYKLLLL 84


>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 135 LGLKVSYSGSPVHHSICP 82
           LG+ V + G P+HHSI P
Sbjct: 60  LGVNVEFPGLPLHHSIHP 77


>At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase (04C11)
           [gi:6650208] [PMID:11247608]; similar to beta-Amyrin
           Synthase GI:3688600 from [Panax ginseng]
          Length = 767

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 25  HMLVLLETENSSITLWKQHRTN*MMHWRS*ITYFQTKSSDH 147
           ++L+  +++N  IT+W+  R    + W S + + +    +H
Sbjct: 526 NLLLYFQSKNGGITVWEAARGRTWLEWLSPVEFMEDTIVEH 566


>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 268 RASYPVHDDRLPYGAHLQHEFGVVEK*YHISVEEHYH*VTH 146
           RA   +HDDR    A    E   + +  H+S+ ++Y  V H
Sbjct: 148 RAKKSMHDDRQGADAEFMSEIQTLAQVTHLSLVKYYGFVVH 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,085
Number of Sequences: 28952
Number of extensions: 180683
Number of successful extensions: 378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)