Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0916
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   8.1  

>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 225 KEHPKNLN*YKYKLRVYVFICVDTAVWQACKPGIRHRSLGI 347
           +EHP+N+   K+KL          A W A   G  H+  G+
Sbjct: 258 EEHPRNITSEKHKLASNTACASSFARWNATHQGFSHKKRGM 298



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 225 KEHPKNLN*YKYKLRVYVFICVDTAVWQACKPGIRHRSLGI 347
           +EHP+N+   K+KL          A W A   G  H+  G+
Sbjct: 360 EEHPRNITSEKHKLASNTACASSFARWNATHQGFSHKKRGM 400


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 282 ICVDTAVWQACKPGIRHRSLGIVC 353
           I +  A WQAC PG+R R LG  C
Sbjct: 189 ISLARASWQACAPGLRER-LGSPC 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,473,938
Number of Sequences: 59808
Number of extensions: 458503
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)