Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0916
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34135.2 68417.m04843 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.8  
At4g34135.1 68417.m04842 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.8  
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P...    29   5.0  
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (...    28   6.6  
At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa...    28   8.8  

>At4g34135.2 68417.m04843 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 335

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 101 VP*IILHANGYVANCAGVCVR*H 169
           VP ++ H  GY + CAG C+  H
Sbjct: 148 VPRLVFHGTGYFSLCAGYCIGVH 170


>At4g34135.1 68417.m04842 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 483

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 101 VP*IILHANGYVANCAGVCVR*H 169
           VP ++ H  GY + CAG C+  H
Sbjct: 148 VPRLVFHGTGYFSLCAGYCIGVH 170


>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
           (PRGB) identical to GB:CAA74026 from [Arabidopsis
           thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
           identical to cDNA proteasome subunit prgb GI:2511589
          Length = 204

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 460 YKENISVEEAINIITKKIEIPFRSILA*R*HRFAIKKIQTKNLRNY 597
           Y+ ++SVEEAI ++ K I +  RS L      F IK +     R+Y
Sbjct: 146 YRSDMSVEEAIELVDKCI-LEIRSRLVVAPPNFVIKIVDKDGARDY 190


>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
           (PRCGA) identical to SP|O24633 Proteasome subunit beta
           type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
           {Arabidopsis thaliana}, cDNA proteasome subunit prcga
           GI:2511571
          Length = 199

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 460 YKENISVEEAINIITKKIEIPFRSILA*R*HRFAIKKIQTKNLRNY 597
           Y+ ++SVEEAI ++ K I +  RS L      F IK +     R Y
Sbjct: 146 YRSDMSVEEAIELVDKCI-LEIRSRLVIAPPNFVIKIVDKDGAREY 190


>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
           family similar to double-stranded RNA-specific editase
           GB:AAF69673 GI:7770275 from [Danio rerio]
          Length = 325

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 315 KPGIRHRSLGIVCSERIIYFN---LQKPWSYEILYPFFIKGLVV 437
           KPG    +L + CS++I  +N   +Q    Y++L P +I  + V
Sbjct: 177 KPGRGETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITV 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,079
Number of Sequences: 28952
Number of extensions: 318643
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)