Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0915
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20781| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)                31   1.4  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               29   4.2  
SB_29122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   9.8  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   9.8  

>SB_20781| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
          Length = 391

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 614 YCPPQVLAFDLATDRLVYRHVVNISSYTSPSLFITP-VVDVRPEFPGDCANTF 769
           Y  P +L      D   Y  V  + +YT+PS+  +P V D+   +P  C +T+
Sbjct: 275 YMAPSILTSPKVADIGSYWPVKCVYTYTAPSILTSPKVADIGSYWPVKCVHTY 327



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 614 YCPPQVLAFDLATDRLVYRHVVNISSYTSPSLFITP-VVDVRPEFPGDCANTFV 772
           Y  P +       D   Y  V  + +YT+PS+  +P V D+   +P  C  T++
Sbjct: 223 YTAPSIFTSPKVADIGFYWPVKCVYTYTAPSILTSPKVADIGSYWPVKCVYTYM 276


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 356 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 264
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 771 TNVLAQSPGNSGLTSTTGVINKEGEV*LDMLTTCRYTSRS 652
           T +LA S G  G+T     I+    V  D L T RY +R+
Sbjct: 125 TKLLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_29122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +2

Query: 473 RIVAYPDYSWHENQGQNCGGLTSVFRVAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLAT 652
           RI+    Y WH +       + + F   I+ C  LWIM   + G        +  F ++ 
Sbjct: 2   RILLLYVYGWHNHYYDQVVTVLTTFDPLINHCVCLWIMRKYRDGYASSMGSIMSCFKISD 61

Query: 653 DRLVYRHVVNISSYTSPSLF 712
           D +    +  +SS +  S F
Sbjct: 62  DGVWATAITRLSSMSRRSTF 81


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -2

Query: 474 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 316
           RP+S +    T RP+S+    T  R F P    T      STS  T  P + + F + A 
Sbjct: 70  RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129

Query: 315 DRASSFGNTNSSSAHCLTT 259
              S+F  T        TT
Sbjct: 130 PLQSTFTTTARPLQSTFTT 148


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 227  WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 358
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,758,815
Number of Sequences: 59808
Number of extensions: 583317
Number of successful extensions: 1562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)